View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_24 (Length: 275)
Name: NF14640_low_24
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_24 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 4776220 - 4775958
Alignment:
| Q |
17 |
cagtatacttggtgccttacactacctttcaatcactcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgaca |
116 |
Q |
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| T |
4776220 |
cagtatgcttggtgccttacactacctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgaca |
4776121 |
T |
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| Q |
117 |
gatatgcaagccttgaagagagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaagcctcacaagctttt |
216 |
Q |
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| T |
4776120 |
gatatgcaagccttgaagagagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagctttt |
4776021 |
T |
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| Q |
217 |
gtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatt |
275 |
Q |
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| T |
4776020 |
gtgatgcagattaggcaggagacacaattgacaggaaatcaacaggtgcttatttaatttatt |
4775958 |
T |
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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 43061400 - 43061319
Alignment:
| Q |
198 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatt |
275 |
Q |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttatt |
43061319 |
T |
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