View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14640_low_27 (Length: 247)

Name: NF14640_low_27
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14640_low_27
NF14640_low_27
[»] chr1 (2 HSPs)
chr1 (41-229)||(48476912-48477101)
chr1 (134-229)||(40237383-40237479)
[»] chr6 (3 HSPs)
chr6 (93-189)||(12336148-12336243)
chr6 (111-154)||(17529572-17529615)
chr6 (104-155)||(25739946-25739997)
[»] chr3 (1 HSPs)
chr3 (93-192)||(55339399-55339497)
[»] chr7 (1 HSPs)
chr7 (93-143)||(31430410-31430460)
[»] chr8 (1 HSPs)
chr8 (93-192)||(27420336-27420435)
[»] chr5 (1 HSPs)
chr5 (93-189)||(9064534-9064629)
[»] chr2 (1 HSPs)
chr2 (96-155)||(11002398-11002458)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 48476912 - 48477101
Alignment:
Q  41 gaagaaattttaaaattttccgaccttcagcttgtttgatccttttttattgttgaacaagctaaaattaaattagattaccacaaatgattcatctcgc 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  48476912 gaagaaattttaaaattttccgaccttcagcttgtttgatcctttcttattgttgaacaagctaaaattaaattagagtaccacaaatgattcatctcac 48477011  T
Q  141 acaagacgtgcaaaaaataagcactcaaaagagatacaatgtcagttcaccga-accacaataacgaacaccaagagtttaaacaaaaac 229  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  48477012 acaagacgtgcaaaagagaagcactcaaaagagatacaatgtcagttcatcgataccacaataacgaacaccaagagtttaaacaaaaac 48477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 40237383 - 40237479
Alignment:
Q  134 atctcgcacaagacgtgcaaaaaataagcactcaaaagagatacaatgtcagttcacc-gaaccacaataacgaacaccaagagtttaaacaaaaac 229  Q
    |||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||| |  |||||||| |||||||| |||||||||||||||||    
T  40237383 atctcgcacaagacgtgcaaaagataatcactcaaaagaaatataatgtcagttcaccggtgccacaatatcgaacaccgagagtttaaacaaaaac 40237479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 12336243 - 12336148
Alignment:
Q  93 ttgaacaagctaaaattaaattagattaccacaaatgattcatctcgcacaagacgtgcaaaaaataagcactcaaaagagatacaatgtcagttca 189  Q
    |||||||||| ||||| |||||| || |||| || ||||||||||||||||||  |||||||| | || || | |||| ||||||||| ||||||||    
T  12336243 ttgaacaagccaaaatgaaatta-ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcatttaaaacagatacaatatcagttca 12336148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 17529615 - 17529572
Alignment:
Q  111 aattagattaccacaaatgattcatctcgcacaagacgtgcaaa 154  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  17529615 aattagattaccacaaatgattcatcttgcacaaggcgtacaaa 17529572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 25739946 - 25739997
Alignment:
Q  104 aaaattaaattagattaccacaaatgattcatctcgcacaagacgtgcaaaa 155  Q
    ||||| |||||| ||||||||   ||||||||||||||||||||||||||||    
T  25739946 aaaatgaaattaaattaccaccggtgattcatctcgcacaagacgtgcaaaa 25739997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 55339399 - 55339497
Alignment:
Q  93 ttgaacaagctaaaattaaattagattaccacaaatgattcatctcgcacaagacgtgcaaaaaataagcactcaaaagagatacaatgtcagttcaccg 192  Q
    |||||||||| |||||  ||||| ||||||| || | ||||||||||||||||  |||||||| | || |||| |||  | |||||||||||||||||||    
T  55339399 ttgaacaagccaaaatgtaattaaattaccagaagtaattcatctcgcacaaggtgtgcaaaagagaatcacttaaatca-atacaatgtcagttcaccg 55339497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 31430460 - 31430410
Alignment:
Q  93 ttgaacaagctaaaattaaattagattaccacaaatgattcatctcgcaca 143  Q
    |||||||||| ||||| |||||||||||  |||| ||||||||||||||||    
T  31430460 ttgaacaagccaaaatgaaattagattattacaagtgattcatctcgcaca 31430410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 27420336 - 27420435
Alignment:
Q  93 ttgaacaagctaaaattaaattagattaccacaaatgattcatctcgcacaagacgtgcaaaaaataagcactcaaaagagatac-aatgtcagttcacc 191  Q
    |||||||||| |||||  ||||| || |||| || ||||||||||||||||||  |||||||| | || ||||  ||| |||||| ||||||||||||||    
T  27420336 ttgaacaagccaaaatagaatta-ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcacc 27420434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 9064534 - 9064629
Alignment:
Q  93 ttgaacaagctaaaattaaattagattaccacaaatgattcatctcgcacaagacgtgcaaaaaataagcactcaaaagagatacaatgtcagttca 189  Q
    |||||||||| |||||  ||||| || |||| || |||||||||||||||||   |||||||| | || |||| |||| ||||||||| ||||||||    
T  9064534 ttgaacaagccaaaatggaatta-ataaccataagtgattcatctcgcacaaagtgtgcaaaagagaatcacttaaaaaagatacaatatcagttca 9064629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 11002458 - 11002398
Alignment:
Q  96 aacaagctaaaattaaat-tagattaccacaaatgattcatctcgcacaagacgtgcaaaa 155  Q
    ||||||| ||||| |||| || |||||||| | |||||||||||||||||| |||||||||    
T  11002458 aacaagccaaaatgaaatgtatattaccactagtgattcatctcgcacaaggcgtgcaaaa 11002398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University