View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_33 (Length: 224)
Name: NF14640_low_33
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 11604454 - 11604644
Alignment:
| Q |
18 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
117 |
Q |
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| T |
11604454 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
11604553 |
T |
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| Q |
118 |
tcaagatgaggaggacatgaattatcttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaaat |
208 |
Q |
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| T |
11604554 |
tcaagatgaggaggacatgaattatcttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaaat |
11604644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 11622995 - 11622807
Alignment:
| Q |
18 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
117 |
Q |
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| T |
11622995 |
ttctatgtttgttcttcctcttgtagccaaagcaccacttattgctacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
11622896 |
T |
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| Q |
118 |
tcaagatgaggaggacatgaattatcttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaa |
206 |
Q |
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| T |
11622895 |
tcaagatgaggaggacatgaattaccttgaaatgtcttcctacaaaaaagagaccaagcttcttgctcaggtaagaatgcaaggtgaaa |
11622807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 11641501 - 11641305
Alignment:
| Q |
18 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
117 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11641501 |
ttctatgtttgatcttccttttgtagccaaagcaccactgattgccacaattgctaatggtaaccctccacacaatttcaagatattcctacaaacttct |
11641402 |
T |
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| Q |
118 |
tcaagatgaggaggacatga------attatcttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaaat |
208 |
Q |
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| T |
11641401 |
tcaagatgaggaggacatgagttattattaccttgaaatgtcttcctacaaaaaagagaccaagcttcttgctcaggtaagaattcaaggtgaaaat |
11641305 |
T |
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