View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14640_low_34 (Length: 218)

Name: NF14640_low_34
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14640_low_34
NF14640_low_34
[»] chr5 (11 HSPs)
chr5 (1-201)||(39168800-39169000)
chr5 (65-193)||(39399821-39399949)
chr5 (6-201)||(39879768-39879963)
chr5 (6-201)||(39726372-39726567)
chr5 (1-193)||(40418245-40418431)
chr5 (6-201)||(38987659-38987848)
chr5 (71-201)||(3299487-3299620)
chr5 (71-201)||(3392380-3392513)
chr5 (77-201)||(1163693-1163817)
chr5 (77-201)||(1849919-1850046)
chr5 (73-179)||(40102209-40102315)
[»] chr4 (2 HSPs)
chr4 (1-201)||(25912225-25912422)
chr4 (1-143)||(44444704-44444838)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 39169000 - 39168800
Alignment:
Q  1 tggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  39169000 tggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaagagcatagtcacc 39168901  T
Q  101 ggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168900 ggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatat 39168801  T
Q  201 t 201  Q
    |    
T  39168800 t 39168800  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 39399949 - 39399821
Alignment:
Q  65 tcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatct 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| |    
T  39399949 tcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaaaattt 39399850  T
Q  165 tccacacgagcaaccacggcatcagctaa 193  Q
    |||||||||||||||||||||||||||||    
T  39399849 tccacacgagcaaccacggcatcagctaa 39399821  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 39879963 - 39879768
Alignment:
Q  6 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggatt 105  Q
    |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||  ||||||||||| ||||||||||||||||| |||||||| ||    
T  39879963 atcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggtt 39879864  T
Q  106 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 201  Q
    |||||||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
T  39879863 ttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 39879768  T

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Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 39726567 - 39726372
Alignment:
Q  6 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggatt 105  Q
    |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||  ||||||||||| ||||||||||||||||| |||||||| ||    
T  39726567 atcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggtt 39726468  T
Q  106 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 201  Q
    |||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
T  39726467 ttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 39726372  T

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Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 40418431 - 40418245
Alignment:
Q  1 tggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcacc 100  Q
    |||| |||||||| ||||||||||||| |  |||||| ||||||| |||||||||| ||      |||||||||| ||||||||||||||||| ||||||    
T  40418431 tggtgatcaaaatggcagcaggaaggttgatattgatgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcacc 40418338  T
Q  101 ggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaa 193  Q
    || |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  40418337 gggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacagcatcagctaa 40418245  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 38987848 - 38987659
Alignment:
Q  6 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggatt 105  Q
    |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| ||      |||||||||| ||||||||||||||||| |||||||| ||    
T  38987848 atcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcaccgggtt 38987755  T
Q  106 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 201  Q
    |||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
T  38987754 ttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 38987659  T

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Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 3299620 - 3299487
Alignment:
Q  71 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 167  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  3299620 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3299521  T
Q  168 acacgagcaaccacggcatcagctaaccgatatt 201  Q
    ||||||||||||| |||||||||||| |||||||    
T  3299520 acacgagcaaccatggcatcagctaaacgatatt 3299487  T

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Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 3392513 - 3392380
Alignment:
Q  71 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 167  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  3392513 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3392414  T
Q  168 acacgagcaaccacggcatcagctaaccgatatt 201  Q
    ||||||||||||| |||||||||||| |||||||    
T  3392413 acacgagcaaccatggcatcagctaaacgatatt 3392380  T

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Target: chr5; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 1163693 - 1163817
Alignment:
Q  77 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 175  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  1163693 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 1163791  T
Q  176 aaccacggcatcagctaaccgatatt 201  Q
    ||| | ||||| |||||| |||||||    
T  1163792 aactatggcattagctaaacgatatt 1163817  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 1850046 - 1849919
Alignment:
Q  77 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttccacacga 173  Q
    ||||||||||||||||| |||||| | |||||||||| |||  ||||||||  |||||||||||||||||   | ||||||||||| ||||| |||||||    
T  1850046 gtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacga 1849947  T
Q  174 gcaaccacggcatcagctaaccgatatt 201  Q
    ||||| | ||||| |||||| |||||||    
T  1849946 gcaactatggcattagctaaacgatatt 1849919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 40102209 - 40102315
Alignment:
Q  73 acaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacg 172  Q
    ||||||||||||||| ||||| ||||||  |||| |||| || ||| |||||||| ||||| | |||  | |||||||| ||||||||||||| ||||||    
T  40102209 acaagtcataaccaaaagcatggtcaccaaatttcaaaagataacccagatgagtcttgatattaaatctcgtgtcattctttccaaaatctttcacacg 40102308  T
Q  173 agcaacc 179  Q
    |||||||    
T  40102309 agcaacc 40102315  T

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Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 25912225 - 25912422
Alignment:
Q  1 tggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcacc 100  Q
    |||| |||||||| |||||| |||||| |  |||| | ||||||||||||||   |||||||  ||||| ||||| ||||||||||||||||| |||| |    
T  25912225 tggtgatcaaaatggcagcatgaaggttgttattggtgttggtgttagctcc---tccttctcctcctctagacaggtcataaccaagagcatggtcatc 25912321  T
Q  101 ggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatat 200  Q
    || ||||| |||| |||| ||||||||  |||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||| ||||||    
T  25912322 gggttttagaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacatcatcagctaaacgatat 25912421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 44444704 - 44444838
Alignment:
Q  1 tggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcacc 100  Q
    |||||||||||||||||||| ||||||||||| || | ||| ||||||||| ||||| | ||   |||  ||     |||||||||||||||||||||||    
T  44444704 tggtaatcaaaattgcagcacgaaggtcgccaatggtgttgatgttagctcttcctcttact---cctatag-----tcataaccaagagcatagtcacc 44444795  T
Q  101 ggattttaaaatatgacctagatgagttttgatttgaaaagtt 143  Q
     | |||||||||| |||| |||||||| |||||||||||||||    
T  44444796 aggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

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