View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_35 (Length: 212)
Name: NF14640_low_35
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_35 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: scaffold0331 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 2308 - 2487
Alignment:
| Q |
18 |
gtttgtggcctttccttagacaaggaacccatgttgtgatagtaaagttctaatcaatgtgatctgggtactttcataatgcaggaacccatgttgctta |
117 |
Q |
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| T |
2308 |
gtttgtggcctttccttagacaaggaacccatgttgtgatagtaaagttctaatcaatgtgatttgggtactttcataatgcaggaacccatgttgcata |
2407 |
T |
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| Q |
118 |
ttccacatatgaaaattatcagctggccaatgcattaaaccttgaggacgcaattaatgatctcccactagtatgttgat |
197 |
Q |
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| T |
2408 |
ttccacatatgaaaattatcagctggccaatgcattaaaccttgaggacgcaattaatgatctcccactagtatgttgat |
2487 |
T |
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Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 31941194 - 31941014
Alignment:
| Q |
18 |
gtttgtggcctttccttagacaaggaacccatgttgtgatagtaaagttctaatcaatgtgatctgggtactttcataatgcaggaaccca-tgttgctt |
116 |
Q |
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| T |
31941194 |
gtttgtgcctttttcttagacaaggaacccatattgtgatagtaaagttctaatcaatgtgatctgggtactttcataatgcaggaaattacagttgcat |
31941095 |
T |
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| Q |
117 |
attccacatatgaaaattatcagctggccaatgcattaaaccttgaggacgcaattaatgatctcccactagtatgttgat |
197 |
Q |
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| T |
31941094 |
attccactaatgaaaattgtcagctggccaaggcattaaaccttgaggatgcaattaatgatctcccaccagtatgttgat |
31941014 |
T |
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Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 9391530 - 9391350
Alignment:
| Q |
18 |
gtttgtggcctttccttagacaaggaacccatgttgtgatagtaaagttctaatcaatgtgatctgggtactttcataatgcaggaaccca-tgttgctt |
116 |
Q |
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||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |
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| T |
9391530 |
gtttgtgcctttttcttagacaaggaacccatgctgtgatagtaaagttctaatcaatgtgatctgggtactttcataatgcaggaaattacagttgcat |
9391431 |
T |
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| Q |
117 |
attccacatatgaaaattatcagctggccaatgcattaaaccttgaggacgcaattaatgatctcccactagtatgttgat |
197 |
Q |
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| T |
9391430 |
attccactaatgaaaattgtcagctggccaaggcattaaaccttgagggtgcaattaatgatctcccaccagtatgttgat |
9391350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 1339358 - 1339180
Alignment:
| Q |
18 |
gtttgtggcctttccttagacaaggaacccatgttgtgatagtaaagttctaatcaatgtgatctgggtactttcataatgcagg-aacccatgttgctt |
116 |
Q |
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||||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| | |
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| T |
1339358 |
gtttgtgcccttttcttagataaggaacccatgttgtgattgtaaagttctaatcaatgtgatctgggtactttcataatgcaggcaataacagttgcat |
1339259 |
T |
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| Q |
117 |
attccacatatgaaaattatcagctggccaatgcattaaaccttgaggacgcaattaatgatctcccactagtatgttg |
195 |
Q |
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||||||| ||||||| | |||||||||||| |||||| |||||| |||| ||||| |||||||||||| |||||||| |
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| T |
1339258 |
attccactaatgaaaagtgtcagctggccaaggcattataccttggggacacaattgatgatctcccaccggtatgttg |
1339180 |
T |
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