View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14640_low_4 (Length: 524)

Name: NF14640_low_4
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14640_low_4
NF14640_low_4
[»] chr5 (13 HSPs)
chr5 (321-509)||(25443807-25443995)
chr5 (1-137)||(25444465-25444601)
chr5 (1-90)||(7767496-7767584)
chr5 (1-86)||(27170583-27170667)
chr5 (443-500)||(35273073-35273130)
chr5 (14-90)||(21600764-21600839)
chr5 (15-91)||(27632523-27632599)
chr5 (240-274)||(25444306-25444340)
chr5 (14-91)||(6989404-6989480)
chr5 (14-91)||(1157688-1157764)
chr5 (285-326)||(25444233-25444274)
chr5 (391-475)||(26099388-26099472)
chr5 (16-96)||(36608191-36608271)
[»] chr3 (7 HSPs)
chr3 (32-96)||(25498541-25498605)
chr3 (1-97)||(14993538-14993633)
chr3 (15-92)||(17113969-17114046)
chr3 (1-91)||(27741609-27741698)
chr3 (1-64)||(43275516-43275578)
chr3 (15-96)||(51057130-51057212)
chr3 (59-96)||(38258551-38258588)
[»] chr2 (5 HSPs)
chr2 (3-87)||(3257982-3258066)
chr2 (15-96)||(1242413-1242495)
chr2 (1-91)||(17374880-17374968)
chr2 (14-87)||(3921172-3921244)
chr2 (14-86)||(1552060-1552131)
[»] scaffold0009 (1 HSPs)
scaffold0009 (4-95)||(54030-54121)
[»] chr1 (4 HSPs)
chr1 (15-96)||(32947223-32947304)
chr1 (1-92)||(39709466-39709556)
chr1 (1-91)||(34654503-34654592)
chr1 (39-91)||(34117648-34117700)
[»] scaffold0005 (2 HSPs)
scaffold0005 (19-95)||(47729-47805)
scaffold0005 (1-91)||(250839-250928)
[»] chr7 (7 HSPs)
chr7 (20-96)||(47588718-47588794)
chr7 (15-91)||(36933922-36933998)
chr7 (15-96)||(40074596-40074678)
chr7 (1-69)||(1778146-1778213)
chr7 (22-91)||(11698811-11698879)
chr7 (15-70)||(26199315-26199370)
chr7 (32-96)||(5893241-5893305)
[»] chr4 (11 HSPs)
chr4 (19-95)||(14791926-14792002)
chr4 (1-71)||(6409581-6409650)
chr4 (3-96)||(19657914-19658006)
chr4 (14-91)||(34227461-34227537)
chr4 (1-91)||(14566447-14566536)
chr4 (15-96)||(50589257-50589339)
chr4 (14-96)||(28149600-28149683)
chr4 (46-96)||(23533066-23533116)
chr4 (14-88)||(47518922-47518995)
chr4 (1-42)||(26677302-26677343)
chr4 (32-96)||(12887986-12888050)
[»] chr6 (6 HSPs)
chr6 (1-92)||(3524021-3524111)
chr6 (1-91)||(21880983-21881072)
chr6 (32-96)||(22696247-22696311)
chr6 (1-96)||(34213847-34213941)
chr6 (1-62)||(22577404-22577465)
chr6 (30-96)||(11444779-11444846)
[»] chr8 (5 HSPs)
chr8 (3-70)||(6443585-6443651)
chr8 (1-92)||(5994176-5994266)
chr8 (15-96)||(19554721-19554803)
chr8 (21-89)||(10408411-10408478)
chr8 (32-96)||(19411631-19411696)
[»] scaffold0015 (1 HSPs)
scaffold0015 (15-96)||(79516-79599)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 321 - 509
Target Start/End: Complemental strand, 25443995 - 25443807
Alignment:
Q  321 tccttctctctttccgccatgtcttccccaccggcaaccatgtctgtacctccgccacgccgcgtgaaatccaaaatctggcagacatgtgccggtccat 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25443995 tccttctctctttccgccatgtcttccccaccggcaaccatgtctgtccctccgccacgccgcgtgaaatccaaaatttggcagacatgtgccggtccat 25443896  T
Q  421 cggtgaatgttccaaaggtacgttctaaagtttattacttcccacatggtcacttggaacatgcctgcccttcccctaaccctcaaaca 509  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25443895 cggtgaacgttccaaaggtacgttctaaagtttattacttcccacatggtcacttggaacatgcctgcccttcccctaaccctcaaaca 25443807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 25444601 - 25444465
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaaccgga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  25444601 acaaaagttggatcaaaaccctcaaacatcatcgcaagctgctacaaaaacaacttccaccacctacattccgctgatcgcacacaacccccaaaccgga 25444502  T
Q  101 tatctacatggcggaggagtttgaatttgcggaggag 137  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25444501 tatctacatggtggaggagtttgaatttgcggaggag 25444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7767584 - 7767496
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 90  Q
    |||||||||| | ||||| ||||||||||| || ||| |||| ||||||||||||||||||||| |||||  |||  |||||||||||||    
T  7767584 acaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctgccacaaaaacaacttccaccacccacatttcgctgctcgcacacaaccc 7767496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27170667 - 27170583
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacaca 86  Q
    |||||||||| | ||||| ||||||||||| |||||| |||| ||||||| ||||||||||||| ||||||  ||| |||||||||    
T  27170667 acaaaagttgtaccaaaatcctcaaacatcgtcacaa-ctgccacaaaaataacttccaccacccacattccactactcgcacaca 27170583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 500
Target Start/End: Original strand, 35273073 - 35273130
Alignment:
Q  443 ttctaaagtttattacttcccacatggtcacttggaacatgcctgcccttcccctaac 500  Q
    |||| |||||| |||||| ||||  |||||||||||||||||||||||||||||||||    
T  35273073 ttctcaagttttttactttccactaggtcacttggaacatgcctgcccttcccctaac 35273130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 21600764 - 21600839
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 90  Q
    ||||| ||||||||||| |||||| |||| |||||||||||||| |||||| |||||| |||  |||||||||||||    
T  21600764 caaaatcctcaaacatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaaccc 21600839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 27632599 - 27632523
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    ||||||||||| ||   ||||||||||| |||||||  ||||||||||||||||| |||||  ||||||||||||||    
T  27632599 aaaaccctcaaccaatgtcacaagctgccacaaaaattacttccaccacctacatcctgctgctcgcacacaacccc 27632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 25444340 - 25444306
Alignment:
Q  240 aaaaacagctcattcttaattttatttgaaagaaa 274  Q
    |||||||||||||||||||||||||||||||||||    
T  25444340 aaaaacagctcattcttaattttatttgaaagaaa 25444306  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 6989404 - 6989480
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| |||||| |||  ||||||||||||||    
T  6989404 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaacccc 6989480  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 1157764 - 1157688
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| |||||| |||  ||||||| ||||||    
T  1157764 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacataacccc 1157688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 25444274 - 25444233
Alignment:
Q  285 acaaaatccactatctactattagttttcataattatccttc 326  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||    
T  25444274 acaaattccacgatctactattacttttcataattatccttc 25444233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 475
Target Start/End: Complemental strand, 26099472 - 26099388
Alignment:
Q  391 ccaaaatctggcagacatgtgccggtccatcggtgaatgttccaaaggtacgttctaaagtttattacttcccacatggtcactt 475  Q
    ||||||||||||||| ||||| |||  | || || ||  |||| ||| ||| |||||||||||| ||||||||||| ||||||||    
T  26099472 ccaaaatctggcagaaatgtgtcggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcactt 26099388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 36608271 - 36608191
Alignment:
Q  16 aaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||||||||| || | ||||||||||  ||||||||||||| |||||| |||| || |||  |||| ||||||||| ||||    
T  36608271 aaaccctcaaccaacgtcacaagctgacacaaaaacaactttcaccacttacactccgctgctcgcgcacaacccctaaac 36608191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 25498541 - 25498605
Alignment:
Q  32 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  25498541 tcacaagctgccacaaaaacaacttccaccacctacattctgctgctcgcacacaacccccaaac 25498605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14993538 - 14993633
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaacc 97  Q
    |||||||||| | |||| ||||||||||||||||||||| |  |||||||||||||||||||  ||||||| |||  ||||||||||||||||||||    
T  14993538 acaaaagttgtaccaaatccctcaaacatcatcacaagccgtcacaaaaacaacttccacca-ttacattccgctgctcgcacacaacccccaaacc 14993633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 17114046 - 17113969
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccccc 92  Q
    |||| |||||| || | ||||||||||| |||||| |||||||||| |||||||||| |||  |||||||||||||||    
T  17114046 aaaaacctcaaccaacgtcacaagctgccacaaaagcaacttccactacctacattccgctgctcgcacacaaccccc 17113969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27741698 - 27741609
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||||||||| |  ||| |||||||||||||||||||| ||| ||||||||||| |||||||  ||||||| | |  ||||||||||||||    
T  27741698 acaaaagttgtactaaatccctcaaacatcatcacaagttgccacaaaaacaacatccacca-ttacattccgttgctcgcacacaacccc 27741609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43275516 - 43275578
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacc 64  Q
    |||||||||| | ||||| ||||||||||  ||||||| ||| |||||||||||||||||||||    
T  43275516 acaaaagttgtaccaaaatcctcaaacattgtcacaag-tgccacaaaaacaacttccaccacc 43275578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 51057212 - 51057130
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaa-caacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||||| |||| || ||||||||||| | ||||||| ||| ||||||||||| || ||||||  |||||| ||||||||||||    
T  51057212 aaaaccatcaaccaacatcacaagctaccacaaaaaacaatttccaccacctgcaatctgctgctcgcacgcaacccccaaac 51057130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 38258551 - 38258588
Alignment:
Q  59 accacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  38258551 accacctacattccgctactcgcacacaacccccaaac 38258588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 3258066 - 3257982
Alignment:
Q  3 aaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaa 87  Q
    |||||||| ||||||||| |||| || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||    
T  3258066 aaaagttgtatcaaaaccatcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaa 3257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 1242413 - 1242495
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaac-aacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||||| || ||||||||||||| |||||||  |||||| |||||||||| |||| |  |||||||||||||||||||    
T  1242413 aaaaccctcaaccaacatcacaagctgccacaaaaaataacttcaaccacctacaatctgttgctcgcacacaacccccaaac 1242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 17374880 - 17374968
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||||||||| | ||||| ||||||||||| | |||| |||| ||||||| ||||||||||||| |||||| |||  ||||||||||||||    
T  17374880 acaaaagttgtaccaaaatcctcaaacatcgt-acaa-ctgccacaaaaataacttccaccacccacattccgctgctcgcacacaacccc 17374968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 3921172 - 3921244
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaa 87  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| |||||| |||  ||||||||||    
T  3921172 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaa 3921244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 1552131 - 1552060
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacaca 86  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||  ||||||||||  |||||||||    
T  1552131 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacacacattctgctgctcgcacaca 1552060  T

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Target: scaffold0009 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 54030 - 54121
Alignment:
Q  4 aaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaa 95  Q
    ||||||| | ||||||||||||||||||||||||||||  | |||||||||||||||||||||||||  |||  ||||||| ||||||||||    
T  54030 aaagttgtaccaaaaccctcaaacatcatcacaagctgacagaaaaacaacttccaccacctacatttcgctgctcgcacataacccccaaa 54121  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 32947304 - 32947223
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||| |||||| | |||  |||||||||||||||||||    
T  32947304 aaaaccctcaaccaacgtcacaagctgctacaaaaacaacttccaccatctacatcccgctgctcgcacacaacccccaaac 32947223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 39709556 - 39709466
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccccc 92  Q
    |||||||||| | ||||| |||||||||||  ||||| |||| ||||||||||||| ||||||| ||||||||||  |||||||||||||||    
T  39709556 acaaaagttgtaccaaaatcctcaaacatcgccacaa-ctgccacaaaaacaactttcaccacccacattctgctgctcgcacacaaccccc 39709466  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34654503 - 34654592
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||||||||| | ||||| ||||||||||| || ||| |||  ||||||||||||||||||||| |||||| |||  ||||||||||||||    
T  34654503 acaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctgtcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 34654592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 34117648 - 34117700
Alignment:
Q  39 ctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||| ||||||||||||||||||||| |||||| |||  ||||||||||||||    
T  34117648 ctgccacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 34117700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 47805 - 47729
Alignment:
Q  19 ccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaa 95  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||| ||||||    
T  47805 ccctcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaactcccaaa 47729  T

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Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 250839 - 250928
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||||||||| | ||||| ||||||||||  |||||| | || ||| ||||||||||||||||| |||||| |||  ||||||||||||||    
T  250839 acaaaagttgtaccaaaatcctcaaacatagtcacaa-cagccacataaacaacttccaccaccaacattccgctgctcgcacacaacccc 250928  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 47588718 - 47588794
Alignment:
Q  20 cctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| ||| |||||    
T  47588718 cctcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattctgctgctcgcacacagcccacaaac 47588794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 36933922 - 36933998
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    ||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||  ||  ||||||||||||||    
T  36933922 aaaaccctcaaccaacatcacaagctgccacagaaacaacttccaccacctacattcaactgctcgcacacaacccc 36933998  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 40074678 - 40074596
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaa-caacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||||| || ||||||||||||| ||||||| |||||||||||| | ||| || |||  |||||||||||||||||||    
T  40074678 aaaaccctcaaccaacatcacaagctgccacaaaaaacaacttccaccaacaacaatccgctgctcgcacacaacccccaaac 40074596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1778146 - 1778213
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacat 69  Q
    |||||||||| | ||||| ||||||||||  |||||| |||| ||||||||||||||||||||||||||    
T  1778146 acaaaagttgtaccaaaatcctcaaacattgtcacaa-ctgccacaaaaacaacttccaccacctacat 1778213  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 11698879 - 11698811
Alignment:
Q  22 tcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||| |||| |||||| |||| |||||||||||||| |||||| ||||||||||  ||||||||||||||    
T  11698879 tcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattctgctgctcgcacacaacccc 11698811  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 26199315 - 26199370
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacatt 70  Q
    |||| |||||| || | ||||||||||| ||| |||||||||||||||||||||||    
T  26199315 aaaaacctcaaccaacgtcacaagctgccacacaaacaacttccaccacctacatt 26199370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 5893305 - 5893241
Alignment:
Q  32 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||| ||| ||||||| |||||||||| ||||||||| |||  |||||  ||||||||||||    
T  5893305 tcacaagttgccacaaaaataacttccaccgcctacattccgctgctcgcattcaacccccaaac 5893241  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 14791926 - 14792002
Alignment:
Q  19 ccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaa 95  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||| ||||||    
T  14791926 ccctcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaactcccaaa 14792002  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6409581 - 6409650
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattc 71  Q
    |||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  6409581 acaaaagttgcaccaaaatcctcaaacatcatcacaa-ctgccacaaaaacaacttccaccacctacattc 6409650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 19657914 - 19658006
Alignment:
Q  3 aaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||||||| | ||||  ||||||||||||||||||||||| |||||||||||||||| ||  ||||||| |||  |||||||||||||||||||    
T  19657914 aaaagttgtaccaaattcctcaaacatcatcacaagctgccacaaaaacaacttcca-caattacattccgctgctcgcacacaacccccaaac 19658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 34227537 - 34227461
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| ||||| ||||| ||||||||||||||    
T  34227537 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattttgctactcgcacacaacccc 34227461  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 14566536 - 14566447
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||||||||| | ||||| ||||||||||  |||||| | || ||| ||||||||||||||||| |||||| |||  ||||||||||||||    
T  14566536 acaaaagttgtaccaaaatcctcaaacatagtcacaa-cagccacataaacaacttccaccaccaacattccgctgctcgcacacaacccc 14566447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 50589257 - 50589339
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaa-acaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||| |||||| || ||||||||||||| |||||| ||||||||||||||| ||| || |||  ||||||||||||| |||||    
T  50589257 aaaaacctcaaccaacatcacaagctgccacaaaaaacaacttccaccacccacaatccgctgctcgcacacaacccacaaac 50589339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 28149683 - 28149600
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaa-caacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||||||||||  || ||||||||||||  ||||||| |||||||||||||||||| || | |  ||||||||||||| |||||    
T  28149683 caaaaccctcacccaacatcacaagctgtcacaaaaaacaacttccaccacctacaatcagttgctcgcacacaaccctcaaac 28149600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 23533066 - 23533116
Alignment:
Q  46 aaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||||||||||||||||| | ||||  |||||||||||| ||||||    
T  23533066 aaaaacaacttccaccacctacaatatgctgctcgcacacaaccaccaaac 23533116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 47518995 - 47518922
Alignment:
Q  14 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaac 88  Q
    ||||| |||||| ||||  ||||| |||| |||||||||||||| |||||| ||||||||||  |||||||||||    
T  47518995 caaaaacctcaagcatcgccacaa-ctgccacaaaaacaacttctaccacccacattctgctgctcgcacacaac 47518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26677302 - 26677343
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgc 42  Q
    |||||||||| | |||| ||||||||||||||||||||||||    
T  26677302 acaaaagttgtaccaaatccctcaaacatcatcacaagctgc 26677343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 12887986 - 12888050
Alignment:
Q  32 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||| | ||||||||||||||| || ||||||||| | |  |||||||| ||||||||||    
T  12887986 tcacaagctaccacaaaaacaacttcctccccctacattccgttgctcgcacaccacccccaaac 12888050  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3524111 - 3524021
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccccc 92  Q
    |||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||| || |||||||| ||||||  || ||||||||||||    
T  3524111 acaaaagttgtaccaaaatcctcaaacatcatcacaa-ctgccacaaaaacaacttacatcacctacaatctgctgctcacacacaaccccc 3524021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21880983 - 21881072
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 91  Q
    |||||||||| | ||||| ||||||||||| |||||| |||| ||||||| ||||||||||||| |||||| |||  ||||||||||||||    
T  21880983 acaaaagttgtaccaaaatcctcaaacatcgtcacaa-ctgccacaaaaataacttccaccacccacattccgctgctcgcacacaacccc 21881072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 22696247 - 22696311
Alignment:
Q  32 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||| ||| | ||||||||||||||||||||||||| || |  |||||||||||||||||||    
T  22696247 tcacaagttgccaaaaaaacaacttccaccacctacattttgttgctcgcacacaacccccaaac 22696311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34213941 - 34213847
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||||||||| | ||||| || |||||||| ||| | ||||| ||||||||||||| ||||||| ||||| ||||  | |||||||||||||||||    
T  34213941 acaaaagttgtaccaaaatccccaaacatcctcata-gctgccacaaaaacaactttcaccacccacattttgctgcttgcacacaacccccaaac 34213847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22577404 - 22577465
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccacca 62  Q
    ||||| |||| | |||| ||||||||||||||||||||| || |||||||||||||| ||||    
T  22577404 acaaaggttgtaccaaatccctcaaacatcatcacaagcagccacaaaaacaacttcgacca 22577465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 11444846 - 11444779
Alignment:
Q  30 catcacaagctgctaca-aaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||| ||| ||| ||||||||||||||||||||| |||  ||  |||||||||||||||||||    
T  11444846 catcacaagttgccacataaaacaacttccaccacctacgttcgactgctcgcacacaacccccaaac 11444779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 6443585 - 6443651
Alignment:
Q  3 aaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacatt 70  Q
    |||||||| | ||||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  6443585 aaaagttgtaccaaaatcctcaaacatcatcacaa-ctgccacaaaaacaacttccaccacgtacatt 6443651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 5994176 - 5994266
Alignment:
Q  1 acaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccccc 92  Q
    ||||||| || | ||||| ||||||||||| |||||| || | ||||||||||||||||||||||| ||||||||  |||| ||||| ||||    
T  5994176 acaaaagatgtaccaaaatcctcaaacatcgtcacaa-ctaccacaaaaacaacttccaccacctagattctgctgctcgcgcacaatcccc 5994266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 19554721 - 19554803
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaacaa-cttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||| |||||| || ||||||||||||| ||||||| || |||||||||| ||||||| | |  |||||||||||||||||||    
T  19554721 aaaaacctcaaccaacatcacaagctgccacaaaaaaaaacttccaccacttacattccggtgctcgcacacaacccccaaac 19554803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 10408411 - 10408478
Alignment:
Q  21 ctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacc 89  Q
    |||||||||| || ||| |||| |||||||||||||||||| ||||||||| |||  ||||||||||||    
T  10408411 ctcaaacatcgtcgcaa-ctgccacaaaaacaacttccaccgcctacattccgctgctcgcacacaacc 10408478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 19411696 - 19411631
Alignment:
Q  32 tcacaagctgctac-aaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    ||||||||||| || ||||| |||||||||||||||| ||| | |  |||||||||||||||||||    
T  19411696 tcacaagctgccaccaaaaaaaacttccaccacctacgttccggtgctcgcacacaacccccaaac 19411631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 79599 - 79516
Alignment:
Q  15 aaaaccctcaaacatcatcacaagctgctacaaaaa--caacttccaccacctacattctgctaatcgcacacaacccccaaac 96  Q
    |||||| |||| || ||||||||||||| |||||||  ||||||||||| |||| | || |||  |||||||||||||||||||    
T  79599 aaaaccatcaaccagcatcacaagctgccacaaaaaaacaacttccaccgcctataatccgctgctcgcacacaacccccaaac 79516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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