View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_6 (Length: 475)
Name: NF14640_low_6
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 21 - 460
Target Start/End: Complemental strand, 3175846 - 3175407
Alignment:
| Q |
21 |
aagattccagtgacaagtccagttttgatagcaagagccaaatgtggaccactgaagtataacatgtttgatgatggtggattaagtccctttggcaatt |
120 |
Q |
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| T |
3175846 |
aagattccagtgacaagtccagttttgatagcaagagccaaatgtggaccactgaagtataacatgtttgatgatggtggattaagtccctttggcaatt |
3175747 |
T |
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| Q |
121 |
caccaatcttccaaagaaaacaaagcaaaaaagagagttattaataagatcatttgtatttaacatctcttgtatgtttggattagctctaagtttggca |
220 |
Q |
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| T |
3175746 |
caccaatcttccaaagaaaacaaagtaaaaaagagagttattaataagatcatttgtatttaacatctcttgtatgtttggattagctctaagtttggca |
3175647 |
T |
|
| Q |
221 |
aaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaagcttcaacagaatcacaacgtgaccgtgatctcgtcaaagtcaaacattattcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3175646 |
aaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaagcttcaacagaatcacaacgtgaccgtgatctcgtcaaagtcaaacattattcc |
3175547 |
T |
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| Q |
321 |
aaacatgcactaaaagtaacaaaggtagagtgtcttttcttacaattgctattttattgatcttatgtctcattgaaaagactaaaatggttgatagaat |
420 |
Q |
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| T |
3175546 |
aaacatccactaaaagtaacaaaggtagagtgtcttttcttacaattgctattttattgatcttatgtctcattgaaaagactaaaatggttgatagaat |
3175447 |
T |
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| Q |
421 |
aactgaagtcaatggtgcagctgctgaaatccagaataat |
460 |
Q |
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| T |
3175446 |
aactgaagtcaatggtgcagctgctgaaatccagaataat |
3175407 |
T |
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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 44011439 - 44011530
Alignment:
| Q |
23 |
gattccagtgacaagtccagttttgatagcaagagccaaatgtggaccactgaagtataacatgtttgatgatggtggattaagtccctttg |
114 |
Q |
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| T |
44011439 |
gattcctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattgaagtataacaggtttactgatggtggattaactccctttg |
44011530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 30309671 - 30309731
Alignment:
| Q |
215 |
ttggcaaaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaagcttcaaca |
275 |
Q |
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| T |
30309671 |
ttggcaaaatcacagtgagccactgtgatttgggcagaaactacactttgaagcttcaaca |
30309731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 6011303 - 6011220
Alignment:
| Q |
191 |
tgtatgtttggattagctctaagtttggcaaaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaagcttcaaca |
275 |
Q |
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| T |
6011303 |
tgtatgtttggattgacgataagtttggcaaaatcatggtgtcccaccctgattttgtcaaaagctacagttt-aagcttcaaca |
6011220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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