View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14640_low_8 (Length: 375)

Name: NF14640_low_8
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14640_low_8
NF14640_low_8
[»] chr8 (10 HSPs)
chr8 (157-358)||(38308287-38308488)
chr8 (11-149)||(38308528-38308665)
chr8 (166-260)||(38325225-38325319)
chr8 (173-260)||(38316380-38316467)
chr8 (173-238)||(38305674-38305739)
chr8 (74-149)||(38313114-38313189)
chr8 (173-232)||(38299761-38299820)
chr8 (74-149)||(38305795-38305867)
chr8 (173-222)||(38313005-38313058)
chr8 (174-222)||(38320516-38320564)
[»] chr4 (1 HSPs)
chr4 (173-260)||(38850878-38850965)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 157 - 358
Target Start/End: Complemental strand, 38308488 - 38308287
Alignment:
Q  157 aagtgtcaatagtacaagattcccacaactcaaaggttaaagatatcttattaggaatggtagccagttgttgtttgagcttatgtttgtcttccgtgta 256  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  38308488 aagtgccagtagtacaagattcccacaactcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgta 38308389  T
Q  257 caaaataataaagacttaatgagtaaaagagtggaggaaaatcagagaatattttgtttgggcaaacattacaaaatctagaatccatttgagagaacta 356  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38308388 caaaataataaagacttaatgagtaaaagagtagaggaaaatcagagaatattttgtttgggcaaacattacaaaatctagaatccatttgagagaacta 38308289  T
Q  357 ag 358  Q
    ||    
T  38308288 ag 38308287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 38308665 - 38308528
Alignment:
Q  11 attattctcaaatgaatcatctaaagtaaatgnnnnnnntatttttctctattccccaatcattcaaccattctctcacacatataggctccagtaggag 110  Q
    ||||||||||||||||||||||||||||||||       | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38308665 attattctcaaatgaatcatctaaagtaaatgaaaaaa-tctttttctctactccccaatcattcaaccattctctcacacatataggctccagtaggag 38308567  T
Q  111 ggaaaacaacacagaaattgaaaagcttactatttaact 149  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  38308566 ggaaaacaagacagaaattgaaaagcttactatttaact 38308528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 38325319 - 38325225
Alignment:
Q  166 tagtacaagattcccacaactcaaaggttaaagatatcttattaggaatggtagccagttgttgtttgagcttatgtttgtcttccgtgtacaaa 260  Q
    |||| |||||||||||||| ||||| |||||||||| | |||||||||||||||||| ||||||||| ||||||  ||| |||| | ||||||||    
T  38325319 tagtgcaagattcccacaaatcaaaagttaaagataccctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaa 38325225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 38316467 - 38316380
Alignment:
Q  173 agattcccacaactcaaaggttaaagatatcttattaggaatggtagccagttgttgtttgagcttatgtttgtcttccgtgtacaaa 260  Q
    |||||||||||| ||||| |||||||||||| ||||||||||| |||||| || |||||| |||||  |||| |||| ||||||||||    
T  38316467 agattcccacaaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaa 38316380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 38305739 - 38305674
Alignment:
Q  173 agattcccacaactcaaaggttaaagatatcttattaggaatggtagccagttgttgtttgagctt 238  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||| || |||||| |||||    
T  38305739 agattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagctt 38305674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 38313189 - 38313114
Alignment:
Q  74 tcaaccattctctcacacatataggctccagtaggagggaaaacaacacagaaattgaaaagcttactatttaact 149  Q
    |||||||||||||||||||| |  ||||||||||||||| |||||| |||||| |||| ||  |||||||||||||    
T  38313189 tcaaccattctctcacacatctcagctccagtaggagggtaaacaagacagaagttgagaactttactatttaact 38313114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 38299820 - 38299761
Alignment:
Q  173 agattcccacaactcaaaggttaaagatatcttattaggaatggtagccagttgttgttt 232  Q
    |||||||||||  ||||| |||||||||||| |||||||||| |||||||| ||||||||    
T  38299820 agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgttt 38299761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 38305867 - 38305795
Alignment:
Q  74 tcaaccattctctcacacatataggctccagtaggagggaaaacaacacagaaattgaaaagcttactatttaact 149  Q
    |||||||||||||||||||| | |||| |||| ||    |||||||||||||| |||| || ||||||||||||||    
T  38305867 tcaaccattctctcacacatctcggctacagtgggt---aaaacaacacagaagttgagaaccttactatttaact 38305795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 38313058 - 38313005
Alignment:
Q  173 agattcccacaactcaaaggttaaagatatc----ttattaggaatggtagcca 222  Q
    |||||||||||| ||||| ||||||||||||    |||||||||||||||||||    
T  38313058 agattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagcca 38313005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 38320564 - 38320516
Alignment:
Q  174 gattcccacaactcaaaggttaaagatatcttattaggaatggtagcca 222  Q
    ||||||||||  ||||  |||||||||||| ||||||||||||||||||    
T  38320564 gattcccacagatcaacagttaaagatatcctattaggaatggtagcca 38320516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 38850878 - 38850965
Alignment:
Q  173 agattcccacaactcaaaggttaaagatatcttattaggaatggtagccagttgttgtttgagcttatgtttgtcttccgtgtacaaa 260  Q
    |||||||||||| ||||| | |||||||||| |||||||||||||||  | ||||||||| |||||| |||| |||| ||||||||||    
T  38850878 agattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaa 38850965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University