View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_9 (Length: 360)
Name: NF14640_low_9
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 35060761 - 35061104
Alignment:
| Q |
1 |
gagttgaaatttaaagatgagttggaaaagaaggggaagatagtgaagtggtgttctcaagtggaggttctttcccattcttcattgggttgttttttga |
100 |
Q |
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| T |
35060761 |
gagttgaaatttaaagatgagttggaaaagaaggggaagatagtgaagtggtgttctcaagtggaggttctttcccattcttcattgggttgttttttga |
35060860 |
T |
|
| Q |
101 |
ctcattgtggttggaactcgactttggaaagtttggcatctggggttccactagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaat |
200 |
Q |
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| T |
35060861 |
ctcattgtggttggaactcgactttggaaagtttggtatctggggttccactagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaat |
35060960 |
T |
|
| Q |
201 |
tgaagatgtgtggaagataggggtgagagttgatgataaagtggatgaggatggaattgtaggagggaatgaaattaaaaagtgtttggaagaggtgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35060961 |
tgaagatgtgtggaagataggggtgagagttgatgataaagtggatgaggatggaattgtaggagggaatgaaattaaaaagtgtttggaagaggtgatg |
35061060 |
T |
|
| Q |
301 |
ggaagaggagagaaaggagaggaattgagaaagaatgcaatgaa |
344 |
Q |
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| T |
35061061 |
ggaagaggagagaaaggagaggaattgagaaagaatgcaatgaa |
35061104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 35054041 - 35054353
Alignment:
| Q |
19 |
gagttggaaaagaaggggaagatagtgaagtggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaact |
118 |
Q |
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| T |
35054041 |
gagttagaagagaaggggaagatagtgaaatggtgttctcaaatggagattctttcacatccttcattgggttgttttttgacacactgtggttggaatt |
35054140 |
T |
|
| Q |
119 |
cgactttggaaagtttggcatctggggttccactagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtggaagat |
218 |
Q |
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| T |
35054141 |
caactttggaaagcttggtaaaaggggttcctatggtggcgtttccacaatggacagatcagatgactaatgcaaagttaattgaagatgtgtggaagat |
35054240 |
T |
|
| Q |
219 |
aggggtgagagttgatgataaagtggatgaggatggaattgtaggagggaatgaaattaaaaagtgtttggaagaggtgatgggaagaggagagaaagga |
318 |
Q |
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||| || ||||| ||||| ||||| |||| ||||||||||| ||||| ||||||||| | ||||||||| | ||||||||| || |||||||||||| |
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| T |
35054241 |
aggagtaagagtggatgaagaagtgaatgaagatggaattgtgagaggggatgaaattaggaggtgtttggaggtggtgatggggagtggagagaaagga |
35054340 |
T |
|
| Q |
319 |
gaggaattgagaa |
331 |
Q |
| |
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||||||||||||| |
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| T |
35054341 |
gaggaattgagaa |
35054353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 38179702 - 38179509
Alignment:
| Q |
34 |
gggaagatagtgaagtggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaactcgactttggaaagtt |
133 |
Q |
| |
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|||||||||||||| |||||| ||| ||||||||| | || || ||| || ||||||||| |||| |||||||| ||||| |||||||||||||||| |
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| T |
38179702 |
gggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttaggttgttttatgacgcattgtggatggaattcgactttggaaagtt |
38179603 |
T |
|
| Q |
134 |
tggcatctggggttccactagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtggaagataggggtgag |
227 |
Q |
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| | || |||||||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
38179602 |
taggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcaaagttaattgaagatgtgtggaagactggggtgag |
38179509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 217
Target Start/End: Complemental strand, 38169888 - 38169705
Alignment:
| Q |
34 |
gggaagatagtgaagtggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaactcgactttggaaagtt |
133 |
Q |
| |
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||||||||||| || |||||| ||| ||||||||| | || || ||| |||||||||||| |||| |||||||| ||||| |||||||||||||||| |
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| T |
38169888 |
gggaagatagtaaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtt |
38169789 |
T |
|
| Q |
134 |
tggcatctggggttccactagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtggaaga |
217 |
Q |
| |
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||| || |||||||| | || ||||||||||| ||||| ||||||| |||||||| || ||||||||||||||||||||| |
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| T |
38169788 |
tgggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcgaagttaattgaagatgtgtggaaga |
38169705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 217
Target Start/End: Complemental strand, 38184371 - 38184188
Alignment:
| Q |
34 |
gggaagatagtgaagtggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaactcgactttggaaagtt |
133 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||| | || || ||| |||||||||||| |||| |||||||| ||||| |||||||||||||||| |
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| T |
38184371 |
gggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtt |
38184272 |
T |
|
| Q |
134 |
tggcatctggggttccactagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtggaaga |
217 |
Q |
| |
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||| || |||||||| | || |||||||| || ||||| ||||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
38184271 |
tgggttcaggggttcctatggtagcatttccccagtggacagatcaaactactaatgcaaagttaattgaagatttgtggaaga |
38184188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 38169657 - 38169604
Alignment:
| Q |
271 |
gaaattaaaaagtgtttggaagaggtgatgggaagaggagagaaaggagaggaa |
324 |
Q |
| |
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||||||| |||||||||||||| ||||||||| | ||||| |||||||||||| |
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| T |
38169657 |
gaaattagaaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaa |
38169604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 13670269 - 13670228
Alignment:
| Q |
88 |
ggttgttttttgactcattgtggttggaactcgactttggaa |
129 |
Q |
| |
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||||||||| |||| |||||||||||||||||||| |||||| |
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|
| T |
13670269 |
ggttgttttgtgacacattgtggttggaactcgacgttggaa |
13670228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 13688344 - 13688385
Alignment:
| Q |
88 |
ggttgttttttgactcattgtggttggaactcgactttggaa |
129 |
Q |
| |
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||||||||| |||| |||||||||||||||||||| |||||| |
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| T |
13688344 |
ggttgttttgtgacacattgtggttggaactcgacgttggaa |
13688385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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