View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14641_high_1 (Length: 675)
Name: NF14641_high_1
Description: NF14641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14641_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 54262919 - 54262628
Alignment:
| Q |
1 |
caaagataaggaaaatagttgatcagttctcatttttaatgacctcccctccc-acccaatggtcactccaaaataaagtatcctctccgttccgcatta |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262919 |
caaagataaggaaaatagttgatcagttctcatttttaatgacctcccctccccacccaatggtcactccaaaataaagtatcctctccgttccgcatta |
54262820 |
T |
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| Q |
100 |
tttttctaacgcaaccctaaaaccaattatgattgttacctatcccccttctttccacaattttttacaccccacccactcacccccatttctttttcct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54262819 |
tttttctaacgcaaccctaaaaccaattatgattgttacctatcccccttctttccacaattttttacaccccactcactcacccccatttctttttcct |
54262720 |
T |
|
| Q |
200 |
tacaaacttatttgtcagcatctacacacgatcaaaagtatttagattctaaatggtccctcacctaaaacttgacaggatgctattcattt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54262719 |
tacaaacttatttgtcagcatctacacacgatcaaaagtatttagattctaaatggtccctcacctaaaagttgacaggatgctattcattt |
54262628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 405 - 665
Target Start/End: Complemental strand, 54262627 - 54262367
Alignment:
| Q |
405 |
attgagagatacaatttatagttcttcgcttatgtatatcaggttatcagtcatcctaagtttcacatctaaatgaagcagcaacattgtagttgtaaca |
504 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262627 |
attgagagatacaatttatagttcttcgcttttgtatatcaggttatcagtcatcctaagtttcacatctaaatgaagcagcaacattgtagttgtaaca |
54262528 |
T |
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| Q |
505 |
tgcaagcatagtacacttggtttgccttgcagttgatactctattgtagctcataattaccaatacatcgtcttattagttgtagtagaaaactaggtgc |
604 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262527 |
tgcaagcatagtacatttggtttgccttgcagttgatactctattgtagctcataattaccaatacatcgtcttattagttgtagtagaaaactaggtgc |
54262428 |
T |
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| Q |
605 |
gtgcataccaacaattcttcaacgcttcgatgaatgaaattcttcaatgcttcatgttcat |
665 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54262427 |
gtgcataccaacaattcttcaatgcttcgatgaatgaaattcttcaatgcttcatgttcat |
54262367 |
T |
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