View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14641_high_4 (Length: 395)

Name: NF14641_high_4
Description: NF14641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14641_high_4
NF14641_high_4
[»] chr2 (2 HSPs)
chr2 (8-281)||(31094643-31094908)
chr2 (77-129)||(25093855-25093907)
[»] chr7 (2 HSPs)
chr7 (45-96)||(30529205-30529256)
chr7 (65-109)||(33887893-33887937)
[»] chr4 (3 HSPs)
chr4 (65-130)||(5047204-5047269)
chr4 (65-96)||(36721627-36721658)
chr4 (40-129)||(21074476-21074565)
[»] chr1 (4 HSPs)
chr1 (65-117)||(6983031-6983083)
chr1 (45-129)||(45359268-45359352)
chr1 (43-109)||(14774123-14774189)
chr1 (65-129)||(25670812-25670876)
[»] chr8 (3 HSPs)
chr8 (45-116)||(39691135-39691206)
chr8 (48-117)||(11727924-11727992)
chr8 (65-126)||(41106039-41106100)
[»] chr3 (1 HSPs)
chr3 (46-129)||(13804870-13804953)
[»] chr6 (3 HSPs)
chr6 (43-100)||(12606007-12606064)
chr6 (45-81)||(1371185-1371221)
chr6 (45-81)||(1378933-1378969)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 31094908 - 31094643
Alignment:
Q  8 ccaagaatatttaagaatcttaaatggtaaatttttatttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataa 107  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31094908 ccaacaatatttaagaatcttaaatggtaaatttttatttacgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataa 31094809  T
Q  108 tttcttaattcgaaatccttaat-agtgcctgaagcactcgttagcaagaccctatacaaaattatagatttcagttagtgattaaaaaatgattccaaa 206  Q
    |         ||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31094808 t---------cgaaatccttaaacagtgcctgaagcaatcgttagcaagaccctatacaaaattatagatttcagttagtgattaacaaatgattccaaa 31094718  T
Q  207 cattttagctgtttctaatctatcaagaacttcagtttagttccagaattatataaaggtttcaagcaatctcat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31094717 cattttagctgtttctaatctatcaagaacttcagtttagttccagaatcatataaaggtttcaagcaatctcat 31094643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 25093907 - 25093855
Alignment:
Q  77 aattgaaatatttgacttttaaaacgaataatttcttaattcgaaatccttaa 129  Q
    ||||||||||||||||||||  ||  ||||||||||||||| |||||| ||||    
T  25093907 aattgaaatatttgacttttttaataaataatttcttaatttgaaatcgttaa 25093855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 30529205 - 30529256
Alignment:
Q  45 tttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgactttt 96  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||| ||||    
T  30529205 tttatgaaaatttgtatatataatgcattgagaattgaaatatttgattttt 30529256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 33887893 - 33887937
Alignment:
Q  65 caatgcattgagaattgaaatatttgacttttaaaacgaataatt 109  Q
    ||||||||||| ||||||||||||||||||||  || ||||||||    
T  33887893 caatgcattgaaaattgaaatatttgacttttttaaagaataatt 33887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 5047269 - 5047204
Alignment:
Q  65 caatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaattcgaaatccttaat 130  Q
    ||||||||||  ||||||||| ||||||||||  || |||||||||||| ||| ||||||||||||    
T  5047269 caatgcattggaaattgaaatttttgacttttgtaatgaataatttctttattagaaatccttaat 5047204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 36721627 - 36721658
Alignment:
Q  65 caatgcattgagaattgaaatatttgactttt 96  Q
    ||||||||||||||||||||||||||||||||    
T  36721627 caatgcattgagaattgaaatatttgactttt 36721658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 21074476 - 21074565
Alignment:
Q  40 ttttatttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaattcgaaatccttaa 129  Q
    |||| ||||| |||||| || ||| || | |||||| ||||||||||||||||||||  ||| ||||||||  ||||| ||| |||||||    
T  21074476 ttttttttataaaaaattgtgtattcagtacattgaaaattgaaatatttgacttttttaacaaataattttataatttgaattccttaa 21074565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 6983031 - 6983083
Alignment:
Q  65 caatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaatt 117  Q
    ||||||||||| ||||||||||||||||| ||  || ||||||||||||||||    
T  6983031 caatgcattgaaaattgaaatatttgactcttttaatgaataatttcttaatt 6983083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 45359268 - 45359352
Alignment:
Q  45 tttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaattcgaaatccttaa 129  Q
    |||||||||| || ||||| ||||||||||| ||||||| ||||| ||||||  ||  || ||||||||||| | ||||||||||    
T  45359268 tttatgaaaattcatatattcaatgcattgaaaattgaactatttaacttttttaaataacaatttcttaatccaaaatccttaa 45359352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 14774189 - 14774123
Alignment:
Q  43 tatttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataatt 109  Q
    ||||||||||||   |||||| ||||||||||| ||| ||||||||||| |||| |||| |||||||    
T  14774189 tatttatgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataatt 14774123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 25670812 - 25670876
Alignment:
Q  65 caatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaattcgaaatccttaa 129  Q
    ||||||||||| ||||| | | ||||||||||  || |||||||||||| ||| |||||||||||    
T  25670812 caatgcattgaaaattggagtttttgacttttttaaagaataatttctttattagaaatccttaa 25670876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 39691135 - 39691206
Alignment:
Q  45 tttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaat 116  Q
    |||||||||| | || ||| ||||||||||| ||||||| ||||||||||||  || ||||||||| |||||    
T  39691135 tttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaat 39691206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 11727924 - 11727992
Alignment:
Q  48 atgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaatt 117  Q
    ||||||| | ||||||  |||| ||||| ||||||| |||||||||||| ||| ||||||||||||||||    
T  11727924 atgaaaatttgtatatttaatgtattgaaaattgaagtatttgactttttaaa-gaataatttcttaatt 11727992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 41106039 - 41106100
Alignment:
Q  65 caatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaattcgaaatcct 126  Q
    ||||||||||| ||||||| ||||||||||||  || || ||||||||||||| | ||||||    
T  41106039 caatgcattgaaaattgaactatttgacttttttaatgattaatttcttaatttggaatcct 41106100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 13804870 - 13804953
Alignment:
Q  46 ttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaacgaataatttcttaattcgaaatccttaa 129  Q
    |||||||| ||| | ||| ||||||||||  ||| ||| ||||||||||||  || |||| ||||||||||||| |||||||||    
T  13804870 ttatgaaatatcttgtattcaatgcattggaaatcgaagtatttgactttttgaaggaatgatttcttaattcggaatccttaa 13804953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 12606007 - 12606064
Alignment:
Q  43 tatttatgaaaaatcgtatatacaatgcattgagaattgaaatatttgacttttaaaa 100  Q
    ||||||||||||| ||||||  ||||||||||| |||  |||||||| ||||||||||    
T  12606007 tatttatgaaaaagcgtataatcaatgcattgaaaatccaaatattttacttttaaaa 12606064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 1371185 - 1371221
Alignment:
Q  45 tttatgaaaaatcgtatatacaatgcattgagaattg 81  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  1371185 tttatgaaaaatcgtatattcaatgcattgaaaattg 1371221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 1378933 - 1378969
Alignment:
Q  45 tttatgaaaaatcgtatatacaatgcattgagaattg 81  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  1378933 tttatgaaaaatcgtatattcaatgcattgaaaattg 1378969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University