View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14641_low_10 (Length: 248)
Name: NF14641_low_10
Description: NF14641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14641_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 44122404 - 44122619
Alignment:
| Q |
31 |
caccctatccattgttgcatttctacctgtcctagaagatatctttcattttctcaaacttcaaaattgaatcgggcaagtatctactatatttataaag |
130 |
Q |
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| T |
44122404 |
caccccatccactgtttcatttctacctgtcctagaagatatctttcattttctcaaccttcaaaattgagtcgggcaagtatctactatatttataaag |
44122503 |
T |
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| Q |
131 |
aagtcaatagttgtgcagattttctgtaaaactcggggcaccgtgaatattttaattggactatattttttcttctcctcatccctctcttagtaataat |
230 |
Q |
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| T |
44122504 |
aagtcaatagttgtgcatattttctataaaactcggggcaccgtgaatattttaattggactatattttt--ttctcctcatccctctcttagtattaat |
44122601 |
T |
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| Q |
231 |
ttacacttcgatgtaatg |
248 |
Q |
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|||||||||||||||||| |
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| T |
44122602 |
ttacacttcgatgtaatg |
44122619 |
T |
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