View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14641_low_13 (Length: 206)
Name: NF14641_low_13
Description: NF14641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14641_low_13 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 27411832 - 27412005
Alignment:
| Q |
16 |
aatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttcacctcaagctgctgaacttttcctcaagactcatgatcttgt |
115 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
27411832 |
aatatggaccaataatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatattgt |
27411931 |
T |
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| Q |
116 |
ctttgctagtagaccacctattgaggcagcacaactcatgttttataatcagaaagatgtgagcttcagtgtat |
189 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
27411932 |
ctttgcaagtagaccacctattgaggcagcacaactcatgttttacaatcagaaggatgtgagcttcagtgtat |
27412005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 4631 - 4804
Alignment:
| Q |
16 |
aatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttcacctcaagctgctgaacttttcctcaagactcatgatcttgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
4631 |
aatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttct |
4730 |
T |
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| Q |
116 |
ctttgctagtagaccacctattgaggcagcacaactcatgttttataatcagaaagatgtgagcttcagtgtat |
189 |
Q |
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| T |
4731 |
ctttgctagtagaccaccttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtat |
4804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 8850 - 8677
Alignment:
| Q |
16 |
aatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttcacctcaagctgctgaacttttcctcaagactcatgatcttgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |
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| T |
8850 |
aatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactctttctcaagactcatgattttgt |
8751 |
T |
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| Q |
116 |
ctttgctagtagaccacctattgaggcagcacaactcatgttttataatcagaaagatgtgagcttcagtgtat |
189 |
Q |
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|||||| |||||||||||||||||||||| | || ||||||||||||||||||| ||||| ||||||||||||| |
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| T |
8750 |
ctttgcaagtagaccacctattgaggcagtataattcatgttttataatcagaaggatgttagcttcagtgtat |
8677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 38261798 - 38261916
Alignment:
| Q |
16 |
aatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttcacctcaagctgctgaacttttcctcaagactcatgatcttgt |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
38261798 |
aatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgt |
38261897 |
T |
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| Q |
116 |
ctttgctagtagaccacct |
134 |
Q |
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|||||| |||||||||||| |
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| T |
38261898 |
ctttgcaagtagaccacct |
38261916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 38258041 - 38258171
Alignment:
| Q |
16 |
aatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttcacctcaagctgctgaacttttcctcaagactcatgatcttgt |
115 |
Q |
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||||||||||||| |||||||| || ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38258041 |
aatatggaccaattatgcacttacgtttaggtttagtaccaatcatagttgtttcttcacctcaagcagctgaacttttcctcaagactcatgatcttgt |
38258140 |
T |
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| Q |
116 |
ctttgctagtagaccacctattgaggcagca |
146 |
Q |
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|||||| || |||||||| |||||||||||| |
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| T |
38258141 |
ctttgcaagcagaccaccaattgaggcagca |
38258171 |
T |
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