View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14641_low_4 (Length: 407)
Name: NF14641_low_4
Description: NF14641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14641_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 6284763 - 6284379
Alignment:
| Q |
11 |
attttgattttcttgtacatcctccactacttgtttaaacttcatgtcttccagccaaaaattattgaagcaaaatgggtttggaccccaacccctatct |
110 |
Q |
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| T |
6284763 |
attttgattttcttgtacatcctccactacttgtttaaacttcatgtcttccagccaaaaattattgaagcaaaatgggtttggaccccaacccctatct |
6284664 |
T |
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| Q |
111 |
ccaactttaaaaaccaagaggtaatgatctgatatatccctcgataagacccaccaagccacataaccctaattgttagaccattttttcttgataatta |
210 |
Q |
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| T |
6284663 |
ccaactttaaaaaccaagaggtaatgatctgatatatccctcgataagacccaccaagccacataaccctaattgttagaccattttttcttgataatta |
6284564 |
T |
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| Q |
211 |
gagctctatcaatatgactcatcgcactcccatttgaattataccaagtaaatctacgaccagtagcggtcacatccagcatgtccacctccctcaagaa |
310 |
Q |
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| T |
6284563 |
gagctctatcaatatgactcatcgcactcccatttgaattataccaagtaaatctacgaccagtagcggtcacatccagcatgtccacctccctcaagaa |
6284464 |
T |
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| Q |
311 |
attattaaaaagaattcattttcaatagttgtcccgaagaagcttcaaaatttatcccccttctctctttcaaactacacacgca |
395 |
Q |
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| T |
6284463 |
attattaaaaagagttcattttcaatggttgtcccgaagaagcttcaaaatttatcccccttctctctttcaaactacacacgca |
6284379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 6306077 - 6305966
Alignment:
| Q |
192 |
cattttttcttgataattagagctctatcaatatgactcatcgcactcccatttgaattataccaagtaaatctacgaccagtagcggtcacatccagca |
291 |
Q |
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||||||||||| ||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||||| || |
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| T |
6306077 |
cattttttcttt-taatttgacctttatcaatatgactcatcgcactcccatttaaattataccaagtaaatctacgatctagaggggtcacatccacca |
6305979 |
T |
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| Q |
292 |
tgtccacctccct |
304 |
Q |
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|||||||||||| |
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| T |
6305978 |
agtccacctccct |
6305966 |
T |
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