View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_1 (Length: 763)
Name: NF14642_high_1
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 189 - 746
Target Start/End: Complemental strand, 26047867 - 26047309
Alignment:
| Q |
189 |
gctgtaactgtttctgtttctgactgatat-atactaactagtatcagtcacatttctcacaagaaacaacatgtttattctcagaagaaccatatcttc |
287 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
26047867 |
gctgtcactgtttctgtttctgactgatattatactaactagtatcagtcacatttctcacaagaaacaatatgtttattctcagaagaaccatttcttc |
26047768 |
T |
|
| Q |
288 |
aactaacagcttctccaccatttctcatcaaacatctaattacagaaaacaaatcacactcgctaatctcttcctatccttcggtttcccttcctcttct |
387 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26047767 |
aactaacagcttctccaccatttctcatcaaacatctcattacagaaaacaaatcacactcgctaatctcttcctatccttcggtttcccttcctcttct |
26047668 |
T |
|
| Q |
388 |
cttccccatttcctctccaaaaaccacttcctcttcaattccgatccatcccaccttcgccaatccttaacaaccctcttttccttcaaaattccacaga |
487 |
Q |
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| T |
26047667 |
cttccccatttcctctccaaaaaccacttcctcttcaattccgatccatcccaccttcgccaatccttaacaaccctcttttccttcaaaattccacaga |
26047568 |
T |
|
| Q |
488 |
aaaacctaatttcacttgttcaggatttcccttctgtgttggaaccccaatttctacatagttgggaattgggttttccaaaattcaaatccaagctttc |
587 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26047567 |
aaaacctaatttcacttgttcgggatttcccttctgtgttggaaccccaatttctacatagttgggaattgggttttccaaaattcaaatccaagctttt |
26047468 |
T |
|
| Q |
588 |
taacccttccccgttgatgatagctaacttattgcggtgttctagaactttccatttaaacccacttgaaatttcccgtaaagttgagatttttaggggt |
687 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26047467 |
taacccttccccgttgatgatagccaacttattgcggtgttctagaactttccatttaaacccacttgaaatttcccgtaaaattgagatttttaggggt |
26047368 |
T |
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| Q |
688 |
ttagggttttctgatgatgttttgataagggttttggaggaatttcccagtgcagttgt |
746 |
Q |
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| T |
26047367 |
ttagggttttctgatgatgttttgataagggttttggaggaatttcccagtgcagttgt |
26047309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 26048087 - 26047907
Alignment:
| Q |
9 |
atgaaaagggaagcgtgcatgtggtggaagattgataaagcttctctatgacgagattggttgacgtgtgttgttatttgctttgtgaaggataggagac |
108 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26048087 |
atgaaaagggaagagtgcatgtggtggaagattgataaagcttctctgtgacgagattggttgacgtgtgttgttatttgctttgtgaaggataggagac |
26047988 |
T |
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| Q |
109 |
gttggtggttgggtgaatagaagaatgaggaagacgccatcacttcgcagaaagaaggttggaagaagaatcaatcaattg |
189 |
Q |
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| T |
26047987 |
gttggtggttgggtgaatagaagaatgaggaagacgccatcacttcgcagaaagaaggttggaagaagaatcaatcaattg |
26047907 |
T |
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