View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_12 (Length: 481)
Name: NF14642_high_12
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 20526899 - 20527355
Alignment:
| Q |
1 |
caagcacaaacaaacgagttcagttttgagtaataagagttgcaacttgcaagcttgaaattataaagcatgctaactgaaataatcacaacaatatgct |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20526899 |
caagcacaaacaaaagagttcagttttgagtaataagagttgcaacttgcaagcttgaaattataaagcatgctaactgaaataatcacaacaatatgct |
20526998 |
T |
|
| Q |
101 |
cactgtaaaagagtagagtgtatatgcgctcgaaatagccaaatgctaagttgcaacaaattttcaaaatggtcaaggaaaacaagttaaaaagaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20526999 |
cactgtaaaagagtagagtgtatatgcgctcgaaatagccaaatgctaagttgcaacaaattttcaaaatggtcaagggaaacaagttaaaaagaacaaa |
20527098 |
T |
|
| Q |
201 |
tgagtccttcgaatatgtagcaaaaaagattattacacatttcactaaaaaagtggcactcacctcgggttagtattaaatacaccctctttgcattttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||| |||||| |||||||||||||||| |
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| T |
20527099 |
tgagtccttcgaatatgtagcaaaaaagattattacacatttcactaaaaaagtgtcactcacctttgattattatcaaatactccctctttgcattttt |
20527198 |
T |
|
| Q |
301 |
ataagcactcattgacattttccggctttgttttgtcttgtgattcatgatgcaattgacagaaatttactcaagcaaaggatgattgcaaagcaacaat |
400 |
Q |
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||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
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| T |
20527199 |
ataagcactcattaaatttttccctctttgttttggcttgtgattcatgatgcaattgtcagaaatttactgaagcaaaggatgattggaaagcaacaat |
20527298 |
T |
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| Q |
401 |
gcacaatctgatggtaaataggcctgagttaaaatggtggctcggttttggtgaata |
457 |
Q |
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| |||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |
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|
| T |
20527299 |
gtacaatctgatggtaaataggcctgagttaaaatgtttgctcgtttttggtgaata |
20527355 |
T |
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