View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_20 (Length: 393)
Name: NF14642_high_20
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 8458611 - 8458239
Alignment:
| Q |
6 |
gatgtcgaagaatatgtcatattcgcagtgggtaa------ccttattaatcagtaacctttaaacctaaatatcccttctattccttaatatttcaatt |
99 |
Q |
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| T |
8458611 |
gatgtagaagaaaatgtcatattcgcagtggttaaaaggcaccttattaatcagtaacctttaaacctaaatatcccttctattccttaatatttcaatt |
8458512 |
T |
|
| Q |
100 |
cacatagcaaaatttatttccaaatgcaaaattaattttacataaatcaattataccataaccaggcttgtagtttccatacgaaataagaaaaatgcat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458511 |
cacatagcaaaatttatttccaaatgcaaaattaattttacataaatcaattataccataaccaggcttgtagtttccatacgaaataagaaaaatgcat |
8458412 |
T |
|
| Q |
200 |
ataaatttgcgctgaccatacacacccccacttgagcatgtatttcagtgtgttattttgagaaatagtgaactaagaacctgagttgagccagtatcat |
299 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8458411 |
ataaagttgcgctgaccatacacacccccacttgagcatgtatttcagtgtgttattttgagaaatagtgaactaaaaacctgagttgagccagtatcat |
8458312 |
T |
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| Q |
300 |
gattatctacaaatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458311 |
gattatctacaaatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
8458239 |
T |
|
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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 25802572 - 25802633
Alignment:
| Q |
311 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
372 |
Q |
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| T |
25802572 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
25802633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 6827150 - 6827203
Alignment:
| Q |
319 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
372 |
Q |
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| T |
6827150 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
6827203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 9822994 - 9822941
Alignment:
| Q |
319 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822994 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
9822941 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 27963964 - 27964017
Alignment:
| Q |
319 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27963964 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
27964017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 18361145 - 18361199
Alignment:
| Q |
318 |
ctgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacg |
372 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18361145 |
ctgatcttgaaggccaccattcaatcacaccaggtggcttcccttgagcatcacg |
18361199 |
T |
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