View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_21 (Length: 379)
Name: NF14642_high_21
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 5396151 - 5395797
Alignment:
| Q |
18 |
gtgttcgtgtcaacatctcatacttccgcatgaactacactatggtgatgcttttgattttgtttctgagccttttatggcatccttactcactcattgt |
117 |
Q |
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| T |
5396151 |
gtgttcgtgtcaacatctcatacttccgcatgaactacactatggtgatgcttttgattttgtttctgagccttttatggcatccttactcactcattgt |
5396052 |
T |
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| Q |
118 |
tttcgttatcctaatggcggcatggttgttcttctacttcctccgtgatcagccggtgattttatggggtcggcttgttgatgatcgaattgtggttgtt |
217 |
Q |
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| T |
5396051 |
tttcgttatcctaatggcggcatggttgttcttctacttcctccgtgatcagccggtgattttatggggtcggcttgttgatgatcgaattgtggttgtt |
5395952 |
T |
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| Q |
218 |
ctcatggcgtttgttacggtggctttgttgcttcttacgcaagctactgttaatattgttgttgcggttagtgttgccactgtggttgtggtggcacatg |
317 |
Q |
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| T |
5395951 |
ctcatggcgtttgttacggtggctttgttgcttcttacgcaagctactgttaatattgttgttgcggttagtgttgccactgtggttgtggtggcacatg |
5395852 |
T |
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| Q |
318 |
gtgtgtttaggaagacagaggatttgttctttgaggaagaagaagaagtcattgt |
372 |
Q |
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| T |
5395851 |
gtgtgtttaggaagacagaggatttgttctttgaggaagaagaagaagtcattgt |
5395797 |
T |
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