View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_28 (Length: 310)
Name: NF14642_high_28
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 29461066 - 29460772
Alignment:
| Q |
1 |
aattctggtttgtaatatgattgttatgtatatatcactttgtatgagaacttaataataagttttatgaatcaagttcagttctt---attctctaatt |
97 |
Q |
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| T |
29461066 |
aattctggtttgtaatatgattgttatgtatatatcactttgtatgagaacttaataataagttttatgaatcaagttcagttcttcttattctctaatt |
29460967 |
T |
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| Q |
98 |
ttgttagaaatgattnnnnnnnttaatgagaaagtattggttatttgatacaacaatcttactggatctcaattatggtgcagtgtactagaattcaaaa |
197 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29460966 |
ttgttagaaatgattaaaaaaattaatgagaaagtattggttatttgatacaacaatcttactggatctcaattatggtgcagtgtactagaattcaaaa |
29460867 |
T |
|
| Q |
198 |
ttgggatctaatttaagggaaataaaactcttcatggacgtatgttaatgcatacaattaaataaatgtatgcaccagaattgggaattatgtag |
292 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29460866 |
ttgggatctaatttaagggaaataaaactctacatggacgtatgttaatgcatacaattaaataaatgtatgcaccagaattgggaattatgtag |
29460772 |
T |
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