View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_high_33 (Length: 284)
Name: NF14642_high_33
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 2133825 - 2134074
Alignment:
| Q |
17 |
aatatggctcaaaagttctggagaaaagtcgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133825 |
aatatggctcaaaagttctggagaaaagtcgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaag |
2133924 |
T |
|
| Q |
117 |
catagagtggaagaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133925 |
catagagtggaagaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaag |
2134024 |
T |
|
| Q |
217 |
tgaaagcatggagctcatatggtatcattcaactggtgtctatatgttgt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2134025 |
tgaaagcatggagctcatatggtatcattcaactggtgtctatatgttgt |
2134074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University