View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_39 (Length: 257)
Name: NF14642_high_39
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_39 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 33416188 - 33416411
Alignment:
| Q |
14 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416188 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33416287 |
T |
|
| Q |
114 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
213 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416288 |
cagtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
33416387 |
T |
|
| Q |
214 |
tgcagctctggaagagtgtgccat |
237 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33416388 |
tgcagctctggaagagtgtgccat |
33416411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 33410339 - 33410562
Alignment:
| Q |
14 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410339 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33410438 |
T |
|
| Q |
114 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
213 |
Q |
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||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33410439 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33410538 |
T |
|
| Q |
214 |
tgcagctctggaagagtgtgccat |
237 |
Q |
| |
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||||||| || ||||||||||||| |
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| T |
33410539 |
tgcagctttgaaagagtgtgccat |
33410562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 33424241 - 33424464
Alignment:
| Q |
14 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424241 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33424340 |
T |
|
| Q |
114 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
213 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33424341 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33424440 |
T |
|
| Q |
214 |
tgcagctctggaagagtgtgccat |
237 |
Q |
| |
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||||||| || ||||||||||||| |
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| T |
33424441 |
tgcagctttgaaagagtgtgccat |
33424464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 33428351 - 33428127
Alignment:
| Q |
11 |
cacagatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||| |||||||| |
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| T |
33428351 |
cacagatgaaacaacagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatgtgacgagca |
33428252 |
T |
|
| Q |
111 |
gaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaa |
210 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||| || ||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
33428251 |
gaacagttatcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaa |
33428152 |
T |
|
| Q |
211 |
aagtgcagctctggaagagtgtgcc |
235 |
Q |
| |
|
||||||| ||||| |||| |||||| |
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| T |
33428151 |
aagtgcatctctgaaagaatgtgcc |
33428127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 33436393 - 33436597
Alignment:
| Q |
14 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || || || |||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||| ||| |
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| T |
33436393 |
agatgatacaatagagtgagcattagaagatggaggaggggaaggagcaggtgcgccttctgctagaacagtgatgacaaatttcatttgatgagcagaa |
33436492 |
T |
|
| Q |
114 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
33436493 |
caatgatcagctacgccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaag |
33436592 |
T |
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| Q |
214 |
tgcag |
218 |
Q |
| |
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||||| |
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| T |
33436593 |
tgcag |
33436597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 5384 - 5180
Alignment:
| Q |
14 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || || | |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||| ||| |
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|
| T |
5384 |
agatgatacaatagagtgagcattagaagatggaggagtggaaggagcagatgcgccttctgctagaacagtgatgacaaactttatttgatgagcagaa |
5285 |
T |
|
| Q |
114 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
213 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
5284 |
caatgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
5185 |
T |
|
| Q |
214 |
tgcag |
218 |
Q |
| |
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||||| |
|
|
| T |
5184 |
tgcag |
5180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 24985253 - 24985076
Alignment:
| Q |
53 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttcct |
152 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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|
| T |
24985253 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24985154 |
T |
|
| Q |
153 |
tcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagt |
230 |
Q |
| |
|
|| ||||| |||||||| | ||||||||||| ||||||||||| |||| || ||||||||||||||| || |||||| |
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| T |
24985153 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagt |
24985076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 24991083 - 24990906
Alignment:
| Q |
53 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttcct |
152 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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| T |
24991083 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24990984 |
T |
|
| Q |
153 |
tcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagt |
230 |
Q |
| |
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|| ||||| |||||||| | ||||||||||| ||||||||||| |||| || ||||||||||||||| || |||||| |
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| T |
24990983 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagt |
24990906 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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