View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_high_43 (Length: 251)
Name: NF14642_high_43
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_43 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 4627635 - 4627419
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4627635 |
cttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
4627536 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4627535 |
attttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaa |
4627436 |
T |
|
| Q |
220 |
cttccttcagccctttg |
236 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4627435 |
cttccttcagccctttg |
4627419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 4258817 - 4259035
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4258817 |
ttcttcactttaaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcat |
4258916 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|||||||||||||||||| || | ||||||| | || ||| | ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
4258917 |
tgattttacctttgagactattcaagatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttctcaatctataagaaag |
4259016 |
T |
|
| Q |
218 |
aacttccttcagccctttg |
236 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4259017 |
aacttccttcagccctttg |
4259035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 4594497 - 4594280
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
4594497 |
ttcttcaccttagaggatttcacataacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccc |
4594398 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|| ||||| |||||| ||||||||||||||| |||||||| | ||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
4594397 |
tggttttagctttgaaaccataccagatggtctaacaccaatggaaggtgatggtgatgttagtcaagacataccctctcttgctcaatctataagaaag |
4594298 |
T |
|
| Q |
218 |
aacttccttcagcccttt |
235 |
Q |
| |
|
|| |||||| | |||||| |
|
|
| T |
4594297 |
aatttccttaaacccttt |
4594280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 4517827 - 4517626
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
4517827 |
ttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcac |
4517728 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| || ||||||| ||||| ||||||| ||||||||| ||||||||| | |||||||||||| |
|
|
| T |
4517727 |
tgattttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacattatctctctttccgattcaataagaaag |
4517628 |
T |
|
| Q |
218 |
aa |
219 |
Q |
| |
|
|| |
|
|
| T |
4517627 |
aa |
4517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 4623794 - 4623593
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
4623794 |
ttctttaccttaaaggctttcacataacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcac |
4623695 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|| |||| |||||||||||| |||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
4623694 |
ggactttaactttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttctgattcaataaggaag |
4623595 |
T |
|
| Q |
218 |
aa |
219 |
Q |
| |
|
|| |
|
|
| T |
4623594 |
aa |
4623593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 4502951 - 4503103
Alignment:
| Q |
35 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgaga |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4502951 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
4503050 |
T |
|
| Q |
135 |
ccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagac |
187 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| ||||||| ||||||| |
|
|
| T |
4503051 |
ccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagac |
4503103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4618788 - 4618580
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
4618788 |
ttcttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcac |
4618689 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|| |||| |||||||| ||| |||||||||||||||||| | ||||||||||| ||||||| |||||| |||| |||||| ||||||| |||||||| |
|
|
| T |
4618688 |
ggactttaactttgagagcattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagatgtaccaactctttgtcaatcagtaagaaag |
4618589 |
T |
|
| Q |
218 |
aacttcctt |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
4618588 |
aacttcctt |
4618580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 4575940 - 4575761
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4575940 |
cttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactg |
4575841 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctt |
199 |
Q |
| |
|
| |||| ||||||||| ||||||||||||||||| ||| || ||| |||| ||||| | ||||||| ||| ||||||| |
|
|
| T |
4575840 |
actttaactttgagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctctt |
4575761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 4488840 - 4489006
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
4488840 |
cttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactg |
4488939 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaaga |
186 |
Q |
| |
|
|||||| ||||||||| || |||||||||||||| ||| ||| |||||||||||||||| |||||| |
|
|
| T |
4488940 |
attttagctttgagactattccagatggtttaactccaacagatggtgatggcgatgttagtcaaga |
4489006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 3173488 - 3173298
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||| |
|
|
| T |
3173488 |
cttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatg |
3173389 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaat |
210 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| || | ||||||||||| ||||||| ||||||| ||| | |||||| || |||||| |
|
|
| T |
3173388 |
attttaactttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagacttacgcgctctttgtcgatcaat |
3173298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 4507398 - 4507237
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507398 |
ttcttcaccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcac |
4507299 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgtta |
179 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||| | || |||||||| ||||||| |
|
|
| T |
4507298 |
tgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
4507237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4565516 - 4565308
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||| ||||||| | |
|
|
| T |
4565516 |
ttcttcaccttagaggatttcatataacctttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccg |
4565417 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|| |||| |||||| ||||||||||||||| ||||||| ||||||||||||| ||||||| |||||| |||| |||||| ||||||| |||||||| |
|
|
| T |
4565416 |
tggtttttgctttgaaaccataccagatggtctaacaccgatagaaggtgatggtgatgttagtcaagatgtaccttctcttgctcaatctataagaaaa |
4565317 |
T |
|
| Q |
218 |
aacttcctt |
226 |
Q |
| |
|
|| |||||| |
|
|
| T |
4565316 |
aatttcctt |
4565308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 4558612 - 4558405
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
4558612 |
ttcttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcac |
4558513 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|||||||| ||||||||| || || ||||||||||| ||| || |||||||||||||||| ||||||||| | |||||| | ||||||| |||||| |
|
|
| T |
4558512 |
tgattttagctttgagactattccggatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaag |
4558413 |
T |
|
| Q |
218 |
aacttcct |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
4558412 |
aacttcct |
4558405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 4581501 - 4581294
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
4581501 |
ttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcac |
4581402 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || ||||||| ||| | ||||||| |||||||||| |||| | | ||||||| |||||| |
|
|
| T |
4581401 |
cgattttacctttgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaatcaatcagaaag |
4581302 |
T |
|
| Q |
218 |
aacttcct |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
4581301 |
aacttcct |
4581294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 4482350 - 4482160
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||| || |
|
|
| T |
4482350 |
cttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactg |
4482251 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaat |
210 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||| | |||||||||| || || | ||||||| || ||||||| |||||||||| |
|
|
| T |
4482250 |
attttacctttgaaacgataccagatggtttaactccaattgaaggtgatgatgaagtaagtcaagacttattctctcttactcaatcaat |
4482160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 4265698 - 4265916
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
4265698 |
ttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcag |
4265797 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
||| |||| ||||||||||||||||||||| |||| ||| | ||||| |||| |||| ||||||||||||| | ||||| |||||||| | | | |
|
|
| T |
4265798 |
tgactttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacg |
4265897 |
T |
|
| Q |
218 |
aacttccttcagccctttg |
236 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
4265898 |
aacttccttcaaccctttg |
4265916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 4562147 - 4561968
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataa-cctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgat |
118 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
4562147 |
cttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcact |
4562049 |
T |
|
| Q |
119 |
gattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctt |
199 |
Q |
| |
|
|| |||| ||||||||| ||||||||||||||||| ||| || |||||||| ||| ||| ||||||| ||| ||||||| |
|
|
| T |
4562048 |
gactttaactttgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctctt |
4561968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 4603594 - 4603380
Alignment:
| Q |
21 |
ttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatga |
120 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || || ||| ||| |
|
|
| T |
4603594 |
ttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactga |
4603495 |
T |
|
| Q |
121 |
ttttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaac |
220 |
Q |
| |
|
||||| |||||| || || |||||||| ||||||| | |||||||||| |||||| |||||| |||| ||| |||||||||| ||||||||||| |
|
|
| T |
4603494 |
ttttagctttgaaacaatcccagatggactaacaccgatggaaggtgatgataatgttagtcaagatgtaccttctatttctcaatctataagaaagaat |
4603395 |
T |
|
| Q |
221 |
ttccttcagcccttt |
235 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
4603394 |
ttccttaaacccttt |
4603380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 4572453 - 4572282
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
4572453 |
ttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcac |
4572354 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacat |
189 |
Q |
| |
|
|||||| |||||||| || |||||||||||| | ||| || || ||||||||||||| ||||||||| |
|
|
| T |
4572353 |
caattttaactttgagagtattccagatggtttatctccaacggatggcgatggcgatgttagtcaagacat |
4572282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 4587119 - 4586912
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| | |||||||||||||| ||| |
|
|
| T |
4587119 |
ttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaac |
4587020 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||||| ||| || |||||||| ||||||| ||||||||| | |||||| | ||||||| |||||| |
|
|
| T |
4587019 |
tgattttagctttgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaag |
4586920 |
T |
|
| Q |
218 |
aacttcct |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
4586919 |
aacttcct |
4586912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4612359 - 4612489
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4612359 |
ttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcac |
4612458 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggt |
148 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |
|
|
| T |
4612459 |
tgattttacctttgaggctataccagatggt |
4612489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 4569557 - 4569360
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
4569557 |
ttcttcaccttagaggctttcacataacctttgtcaacaccgaa----atcacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcac |
4569462 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| || ||||||| |||| ||| ||| |||||| || ||||||| | | |||||||||||| |
|
|
| T |
4569461 |
tgattttacctttgagactattccagatggtttaactccgacagaaggttatggtgatattagtcaagaaattgtctctcttgatgattcaataagaaag |
4569362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 4298172 - 4298357
Alignment:
| Q |
51 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
150 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||| ||| ||| || |||||||||||| | |||| ||||||||| || ||||||||| | |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtct |
4298271 |
T |
|
| Q |
151 |
aacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
236 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4298272 |
gactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttg |
4298357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 4513622 - 4513755
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |
|
|
| T |
4513622 |
cttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccg |
4513721 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtttaac |
153 |
Q |
| |
|
||||| ||||||||| || || ||||||||||| |
|
|
| T |
4513722 |
attttcgctttgagactattcctgatggtttaac |
4513755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 4599651 - 4599443
Alignment:
| Q |
17 |
attcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcg |
116 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||| || ||||| || |||||||||||||| |||||||||||||||||| ||| | | |||||||| |
|
|
| T |
4599651 |
attcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttca |
4599552 |
T |
|
| Q |
117 |
atgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaa |
216 |
Q |
| |
|
||||||| |||| ||||| || |||||||||||||| ||| |||| |||||||| |||||||| || |||||| ||||| | | ||||||| ||||| |
|
|
| T |
4599551 |
ctgatttttccttcgagactattccagatggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaaatcaatcagaaa |
4599452 |
T |
|
| Q |
217 |
gaacttcct |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
4599451 |
taacttcct |
4599443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 4462692 - 4462562
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||| | | ||||||||| || |
|
|
| T |
4462692 |
cttcaccttagaggttttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactg |
4462593 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggttt |
150 |
Q |
| |
|
| |||| |||||||||||| ||| ||||||| |
|
|
| T |
4462592 |
actttaactttgagaccattccaaatggttt |
4462562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 4471401 - 4471269
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| || | ||||||||||| |
|
|
| T |
4471401 |
ttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcac |
4471302 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggttt |
150 |
Q |
| |
|
||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
4471301 |
tgactttaactttgagaccattccaaatggttt |
4471269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 4255478 - 4255545
Alignment:
| Q |
46 |
ctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtt |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
4255478 |
ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 4483534 - 4483568
Alignment:
| Q |
60 |
aatacaatcacaaacgtttgctcaaatcaagaggt |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggt |
4483568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 4496222 - 4496189
Alignment:
| Q |
61 |
atacaatcacaaacgtttgctcaaatcaagaggt |
94 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
4496222 |
atacaatgacaaacgtttgctcaaatcaagaggt |
4496189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 1282918 - 1282712
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||| || |
|
|
| T |
1282918 |
cttcaccttagaggcttttacataacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactg |
1282819 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa |
219 |
Q |
| |
|
|||||| |||||| ||||| ||||||||| ||||| |||||||||||||||| ||||||| |||| | |||| ||||||| |||||| ||||||||||| |
|
|
| T |
1282818 |
attttagctttgaaaccatcccagatggtctaacatcactagaaggtgatggtgatgttagtcaacatgtaccttctctttgtcaatctataagaaagaa |
1282719 |
T |
|
| Q |
220 |
cttcctt |
226 |
Q |
| |
|
|||||| |
|
|
| T |
1282718 |
tttcctt |
1282712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 35776322 - 35776272
Alignment:
| Q |
29 |
aaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
79 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35776322 |
aaaggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35776272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 35842126 - 35842079
Alignment:
| Q |
32 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
79 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35842126 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35842079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 35854634 - 35854587
Alignment:
| Q |
32 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
79 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35854634 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35854587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 35869243 - 35869196
Alignment:
| Q |
32 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
79 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35869243 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35869196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 35759894 - 35759847
Alignment:
| Q |
32 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
79 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35759894 |
ggtttccacataacctttgtgaacactgaattcaaccacaaacgtttg |
35759847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 1242 - 1031
Alignment:
| Q |
21 |
ttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatga |
120 |
Q |
| |
|
||||||||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||| |
|
|
| T |
1242 |
ttcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactga |
1143 |
T |
|
| Q |
121 |
ttttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaac |
220 |
Q |
| |
|
||||| |||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
1142 |
ttttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgtcaatctataagaaagaat |
1046 |
T |
|
| Q |
221 |
ttccttcagcccttt |
235 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
1045 |
ttccttaaacccttt |
1031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 1676005 - 1675794
Alignment:
| Q |
21 |
ttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatga |
120 |
Q |
| |
|
||||||||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||| |
|
|
| T |
1676005 |
ttcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactga |
1675906 |
T |
|
| Q |
121 |
ttttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaac |
220 |
Q |
| |
|
||||| |||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
1675905 |
ttttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgtcaatctataagaaagaat |
1675809 |
T |
|
| Q |
221 |
ttccttcagcccttt |
235 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
1675808 |
ttccttaaacccttt |
1675794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 16685029 - 16685145
Alignment:
| Q |
119 |
gattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaaga |
218 |
Q |
| |
|
||||||| ||||||||| || ||| |||||||| | ||| || |||||||||||||||| ||||||||||| | |||||| | ||||||| ||||||| |
|
|
| T |
16685029 |
gattttagctttgagactattccatatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaaga |
16685128 |
T |
|
| Q |
219 |
acttccttcagcccttt |
235 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
16685129 |
acttcctccaacccttt |
16685145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 20862453 - 20862582
Alignment:
| Q |
20 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatg |
119 |
Q |
| |
|
|||||||||| ||| ||| ||||||| |||||||| |||||||||||||||||||| ||||| || |||| ||| || |||||||||||||| || |
|
|
| T |
20862453 |
cttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactg |
20862552 |
T |
|
| Q |
120 |
attttacctttgagaccataccagatggtt |
149 |
Q |
| |
|
| ||| |||||||||| | |||||||||| |
|
|
| T |
20862553 |
actttcgctttgagaccgttccagatggtt |
20862582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 2311 - 2098
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2311 |
ttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgc |
2212 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcg---atgttactcaagacataccctctctttctcaatcaataaga |
214 |
Q |
| |
|
||||||| ||| ||||| || || ||||||||||| ||| | |||| ||||| | |||||| ||||||||||| |||||||| | ||||||| ||| |
|
|
| T |
2211 |
tgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcaga |
2112 |
T |
|
| Q |
215 |
aagaacttccttca |
228 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
2111 |
aaaaacttccttca |
2098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 2092 - 2305
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2092 |
ttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgc |
2191 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcg---atgttactcaagacataccctctctttctcaatcaataaga |
214 |
Q |
| |
|
||||||| ||| ||||| || || ||||||||||| ||| | |||| ||||| | |||||| ||||||||||| |||||||| | ||||||| ||| |
|
|
| T |
2192 |
tgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcaga |
2291 |
T |
|
| Q |
215 |
aagaacttccttca |
228 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
2292 |
aaaaacttccttca |
2305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 24104582 - 24104364
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||| | ||| | ||||||||||| | |
|
|
| T |
24104582 |
ttcttcaccttagaggctttcacataaccttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaa |
24104483 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
||| |||| |||||||||||||||||||||| |||| ||| | ||||| |||| |||||||||||||||||| | ||||| |||||||| | | | |
|
|
| T |
24104482 |
tgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacg |
24104383 |
T |
|
| Q |
218 |
aacttccttcagccctttg |
236 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24104382 |
aacttccttcagccctttg |
24104364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 26903670 - 26903638
Alignment:
| Q |
44 |
acctttgtcaacactgaatacaatcacaaacgt |
76 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
26903670 |
acctttgttaacactgaatacaatcacaaacgt |
26903638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 3088232 - 3088014
Alignment:
| Q |
18 |
ttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcga |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||| ||| | ||||||||||| |
|
|
| T |
3088232 |
ttcttcaccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcac |
3088133 |
T |
|
| Q |
118 |
tgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaag |
217 |
Q |
| |
|
||||||| ||||||||| || | ||||||| |||| ||| | |||||| |||| ||||||| ||||||| | | ||||||| ||||||| | ||||| |
|
|
| T |
3088132 |
tgattttgtctttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaag |
3088033 |
T |
|
| Q |
218 |
aacttccttcagccctttg |
236 |
Q |
| |
|
|||||| |||| ||||||| |
|
|
| T |
3088032 |
aacttcattcaaccctttg |
3088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 3310 - 3379
Alignment:
| Q |
165 |
gtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctt |
234 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||| ||| |||||||||| |
|
|
| T |
3310 |
gtgatggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagccctt |
3379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 1921 - 1971
Alignment:
| Q |
29 |
aaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
79 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
1921 |
aaaggtttccatataacctttgtgaacactgaattcaaccacaaacgtttg |
1971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 1349579 - 1349627
Alignment:
| Q |
39 |
acataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatc |
87 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||| || |||||||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatc |
1349627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University