View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_44 (Length: 250)
Name: NF14642_high_44
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_44 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42281313 - 42281549
Alignment:
| Q |
1 |
cattatatgaattgtgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42281313 |
cattatatgaattgtgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttaccatgtcaacttggaaatttcttgt |
42281412 |
T |
|
| Q |
101 |
gaccttgttttccaataattaaatttgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281413 |
gaccttgttttccaataattaaatttgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaa |
42281512 |
T |
|
| Q |
201 |
acacaatgatgatgttcaagaatgataagtgataagt |
237 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||| |
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| T |
42281513 |
acacaatgatgacgttgaagaatgataagtgataagt |
42281549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42285682 - 42285923
Alignment:
| Q |
1 |
cattatatgaattgtgtttgcgtttggact-gatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttg |
99 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42285682 |
cattatatgaattgtgtttgcatttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttg |
42285781 |
T |
|
| Q |
100 |
tgaccttgttttccaataattaaatt----tgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcata |
195 |
Q |
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| |||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||| ||||||| ||| |
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| T |
42285782 |
ttaccttgttttccaaaaattaaataaatgtgtggttcataattgctcaacatggcttacattggactatgcacacatgacgagagtgtgtgcatttata |
42285881 |
T |
|
| Q |
196 |
aggaaacacaatgatgatgttcaagaatgataagtgataagt |
237 |
Q |
| |
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||||||||||||||||| | |||||||| ||||||||||||| |
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| T |
42285882 |
aggaaacacaatgatgacgatcaagaataataagtgataagt |
42285923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42254952 - 42255191
Alignment:
| Q |
1 |
cattatatgaattgtgtttgcgtttggact-gatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttg |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42254952 |
cattatatgaatcgtgtttgcgtttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttctag |
42255051 |
T |
|
| Q |
100 |
tgaccttgttttccaataattaaatt----tgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcata |
195 |
Q |
| |
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| ||||||||||| | |||||||| |||||||||||||| ||||||||||||| |||| |||| ||||||| ||| |||||| |||||||||| |
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| T |
42255052 |
tttccttgttttcctagaattaaataaatgtgtggttcataatttctctacatggcttgaattggactacgcacacacgacgacagtgtctgcattcata |
42255151 |
T |
|
| Q |
196 |
aggaaacacaatgatgatgttcaagaatgataagtgataa |
235 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |
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| T |
42255152 |
aggaaacacaatgaagacgttcaagaatgataagtgataa |
42255191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42260478 - 42260721
Alignment:
| Q |
1 |
cattatatgaattgtgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttacca---tgttaacttggaaatttct |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42260478 |
cattatatgaatagtgtttgcgtttggactgattatatttttatttcttgctttatctttctagttttggttttaccatgttgttaacttggaaatttct |
42260577 |
T |
|
| Q |
98 |
tgtgaccttgttttcca----ataattaaatttgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattca |
193 |
Q |
| |
|
||| ||||||||||||| ||| ||||| ||||||| ||||||| | | ||| |||||||||| ||| |||||||||||||||| || || |||| | |
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| T |
42260578 |
tgttaccttgttttccaggagttaaataaatgtgtggtttataattgttttgcattgcttacattggactctgcacacatgacaacaatgtgtacattta |
42260677 |
T |
|
| Q |
194 |
taaggaaacacaatgatgatgttcaagaatgataagtgataagt |
237 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
42260678 |
taaggaatcacaatgatgacgttcaagaatgataagtgataagt |
42260721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 42272648 - 42272811
Alignment:
| Q |
1 |
cattatatgaattgtgtttgcgtttggact-gatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42272648 |
cattatatgaattgtgtttgcgtttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttg |
42272747 |
T |
|
| Q |
100 |
tgaccttgttttccaataattaaa----tttgtggttcataattgctctacatggcttacattg |
159 |
Q |
| |
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| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
42272748 |
ttaccttgttttccaagaattaaataattgtgtggttcataattgctctacatggcttacattg |
42272811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 42269501 - 42269598
Alignment:
| Q |
1 |
cattatatgaattgtgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttctt |
98 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
42269501 |
cattatatgacttgcgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttacaatgttaacttggaaaattctt |
42269598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 489313 - 489556
Alignment:
| Q |
1 |
cattatatgaattgtgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttacca---tgttaacttggaaatttct |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
489313 |
cattatatgaatagtgtttgcgtttggactgattatatttttatttcttgctttatctttctagttttggttttaccatgttgttaacttggaaatttct |
489412 |
T |
|
| Q |
98 |
tgtgaccttgttttcca----ataattaaatttgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattca |
193 |
Q |
| |
|
||| ||||||||||||| ||| ||||| ||||||| ||||||| | | ||| |||||||||| ||| |||||||||||||||| || || |||| | |
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| T |
489413 |
tgttaccttgttttccaggagttaaataaatgtgtggtttataattgttttgcattgcttacattggactctgcacacatgacaacaatgtgtacattta |
489512 |
T |
|
| Q |
194 |
taaggaaacacaatgatgatgttcaagaatgataagtgataagt |
237 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
489513 |
taaggaatcacaatgatgacgttcaagaatgataagtgataagt |
489556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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