View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_45 (Length: 249)
Name: NF14642_high_45
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_45 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37375036 - 37374806
Alignment:
| Q |
1 |
ttgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375036 |
ttgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttctt |
37374937 |
T |
|
| Q |
101 |
agctacttcactgaatccatttccaccattggaagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37374936 |
agctacttcactgaatccatttccaccattggaagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaa |
37374837 |
T |
|
| Q |
201 |
ttcatattagcacccgggacattcttcctat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
37374836 |
ttcatattagcacccgggacattcttcctat |
37374806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 37360210 - 37359984
Alignment:
| Q |
5 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttcttagct |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
37360210 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaacttcaaacctaagctatgtactttcttagct |
37360111 |
T |
|
| Q |
105 |
acttcactgaatccatttccaccattggaagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaattca |
204 |
Q |
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| ||| |||||||||| |||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37360110 |
atttcggtgaatccattcccacttttggatgaaggccaccttactggatcaggggccatccttccccattgatcgatcacgtcgaatccaagagaattac |
37360011 |
T |
|
| Q |
205 |
tattagcacccgggacattcttcctat |
231 |
Q |
| |
|
||| |||||||||||| |||||||||| |
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| T |
37360010 |
tatgagcacccgggactttcttcctat |
37359984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 37367854 - 37368080
Alignment:
| Q |
5 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttcttagct |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
37367854 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaacttcaaacctaagctatgtactttcttagct |
37367953 |
T |
|
| Q |
105 |
acttcactgaatccatttccaccattggaagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaattca |
204 |
Q |
| |
|
| ||| |||||||||| |||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37367954 |
atttctgtgaatccattcccacttttggatgaaggccaccttactggatcaggggccatccttccccattgatcgatcacgtcgaatccaagagaattac |
37368053 |
T |
|
| Q |
205 |
tattagcacccgggacattcttcctat |
231 |
Q |
| |
|
||| |||||||||||| |||||||||| |
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|
| T |
37368054 |
tatgagcacccgggactttcttcctat |
37368080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 37382374 - 37382148
Alignment:
| Q |
5 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttcttagct |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||| |||||||||||| |
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| T |
37382374 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctctcataacatgaattccaaatttcaaacctaagctatgtactttcttagct |
37382275 |
T |
|
| Q |
105 |
acttcactgaatccatttccaccattggaagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaattca |
204 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
37382274 |
acttcactgaatccattcccacctttggaagaaggccaccttcctggatcaggaaccatccttccccatttatcaatcacgtcgaatccaagggaatcac |
37382175 |
T |
|
| Q |
205 |
tattagcacccgggacattcttcctat |
231 |
Q |
| |
|
||| |||||||||||| |||||||||| |
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|
| T |
37382174 |
tataagcacccgggactttcttcctat |
37382148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 41230234 - 41230460
Alignment:
| Q |
5 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttcttagct |
104 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41230234 |
tgtatctagaataggggtatttgcatccacagcttgtgtgcttatccctctcataatatgaattccaaactttaaacctaagctatgtactttcttagct |
41230333 |
T |
|
| Q |
105 |
acttcactgaatccatttccaccattggaagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaattca |
204 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |||||| | |
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| T |
41230334 |
acttcacttaacccattcccaccatgggaagaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaa |
41230433 |
T |
|
| Q |
205 |
tattagcacccgggacattcttcctat |
231 |
Q |
| |
|
||||||||| | || |||||||||| |
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| T |
41230434 |
cattagcacctgcaactttcttcctat |
41230460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 39243536 - 39243340
Alignment:
| Q |
5 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttcttagct |
104 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| | | |||||||| |||||| |
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| T |
39243536 |
tgtatctaggataggcgtgtttgcattgacagcttgtgtgcttatccctctcataacatgaatcccaaactttaaacccatgttatgcactcgattagct |
39243437 |
T |
|
| Q |
105 |
acttcactgaatccatttccaccattggaagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaat |
201 |
Q |
| |
|
||||| ||||| || || ||| | | |||||||||||||| |||| ||||| | |||||| ||||||| ||||||||| |||||||||||||||| |
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|
| T |
39243436 |
acttcgctgaaccctttcccatcttgtgaagaaggccacctttctgggtcaggaatcatcctcccccattcatcaatcacatcgaatccaagagaat |
39243340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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