View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_high_52 (Length: 238)
Name: NF14642_high_52
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_52 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 36575076 - 36574854
Alignment:
| Q |
16 |
tttactacaacattattagcatggagtgtcattgaatttggaagctcaatgcaggaccagattgacaatgctagagctgctatccggtggagtaccgatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36575076 |
tttactacaacattattagcatggagtgtcattgaatttggaagctcaatgcaggaccagattgacaatgctagagctgctatccggtggagtaccgatt |
36574977 |
T |
|
| Q |
116 |
accttctcaaagccgccaccacgactccagacacgttatacgtccaagtgagtggccgctctgagaatgttttgggtgcgcgatcacacattttattagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36574976 |
accttctcaaagccgccaccacgactccagacacgttatacgtccaagtgagtggccgctctgagaatgttttgggtgcgcgatcacacattttattagt |
36574877 |
T |
|
| Q |
216 |
taaaaaattgtttctaaatatcc |
238 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36574876 |
taaaaaattgtttctaaatatcc |
36574854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University