View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_58 (Length: 223)
Name: NF14642_high_58
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_58 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 29647458 - 29647644
Alignment:
| Q |
22 |
ttaatatattcatcctaaactaggttcaagcttaaagttgcaattgaggaaggaggtactccatttaacaaggttcatggcacccatctctttgattatc |
121 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29647458 |
ttaatatattcatcctaaattaggtccaagcttaaagttgcaattgaggaaggaggtactccatttaacaaggttcatggcacccatctctttgattatc |
29647557 |
T |
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| Q |
122 |
ccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaactatagtgatgaaaaaggttcttgagtgct |
208 |
Q |
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| T |
29647558 |
ccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaactatagtgatgaaaaaggttcttgaatgct |
29647644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 6522 - 6644
Alignment:
| Q |
82 |
ccatttaacaaggttcatggcacccatctctttgattatcccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaacta |
181 |
Q |
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||||| |||| |||||||||||| ||| |||| ||||||| |||||||||| |||||||| || || ||||||||||||||| ||||||||| | | |
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| T |
6522 |
ccattcaacatggttcatggcacacatgcctttcattatccaagcttggactcaaggttcaacaaagttttcaatacagcgatgatcaatcataccaaaa |
6621 |
T |
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| Q |
182 |
tagtgatgaaaaaggttcttgag |
204 |
Q |
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|||| ||||| |||||||||||| |
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| T |
6622 |
tagttatgaacaaggttcttgag |
6644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 28643261 - 28643139
Alignment:
| Q |
82 |
ccatttaacaaggttcatggcacccatctctttgattatcccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaacta |
181 |
Q |
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||||| |||| |||||||||||| ||| |||| ||||||| |||||||||| |||||||| || || ||||||||||||||| ||||||||| | | |
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| T |
28643261 |
ccattcaacatggttcatggcacacatgcctttcattatccaagcttggactcaaggttcaacaaagttttcaatacagcgatgatcaatcataccaaaa |
28643162 |
T |
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| Q |
182 |
tagtgatgaaaaaggttcttgag |
204 |
Q |
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|||| ||||| |||||||||||| |
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| T |
28643161 |
tagttatgaacaaggttcttgag |
28643139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 28652213 - 28652091
Alignment:
| Q |
82 |
ccatttaacaaggttcatggcacccatctctttgattatcccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaacta |
181 |
Q |
| |
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||||| |||| |||||||||||| ||| |||| ||||||| |||||||||| |||||||| || || ||||||||||||||| ||||||||| | | |
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| T |
28652213 |
ccattcaacatggttcatggcacacatgcctttcattatccaagcttggactcaaggttcaacaaagttttcaatacagcgatgatcaatcataccaaaa |
28652114 |
T |
|
| Q |
182 |
tagtgatgaaaaaggttcttgag |
204 |
Q |
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|||| ||||| |||||||||||| |
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| T |
28652113 |
tagttatgaacaaggttcttgag |
28652091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 28725353 - 28725223
Alignment:
| Q |
70 |
gaaggaggtactccatttaacaaggttcatggcacccatctctttgattatcccagcttggacttgaggttcaatcaaattctcaatacagcgatgagca |
169 |
Q |
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||||| |||| |||||| |||| |||||||||||| ||| |||||||||||| || || |||| |||||||||||| || ||||||||||||||| || |
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| T |
28725353 |
gaagggggtattccattcaacatggttcatggcacacatgcctttgattatcctagttttgactcaaggttcaatcaagttttcaatacagcgatgatca |
28725254 |
T |
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| Q |
170 |
atcatacaactatagtgatgaaaaaggttct |
200 |
Q |
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| T |
28725253 |
accataccaagatagttatgaagaaggttct |
28725223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 28710555 - 28710445
Alignment:
| Q |
94 |
gttcatggcacccatctctttgattatcccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaactatagtgatgaaaa |
193 |
Q |
| |
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||||||||||| ||| |||||||||||| |||||||||| |||||| | || || |||||||| |||||| ||||||||| | ||||| ||||| | |
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| T |
28710555 |
gttcatggcacacatgcctttgattatccaagcttggactcaaggttctactaagttttcaatacaacgatgatcaatcatactaagatagttatgaaca |
28710456 |
T |
|
| Q |
194 |
aggttcttgag |
204 |
Q |
| |
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||||||||||| |
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| T |
28710455 |
aggttcttgag |
28710445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 28717902 - 28717792
Alignment:
| Q |
94 |
gttcatggcacccatctctttgattatcccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaactatagtgatgaaaa |
193 |
Q |
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||||||||||| ||| |||||||||||| |||||||||| |||||| | || || |||||||| |||||| ||||||||| | ||||| ||||| | |
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| T |
28717902 |
gttcatggcacacatgcctttgattatccaagcttggactcaaggttctactaagttttcaatacaacgatgatcaatcatactaagatagttatgaaca |
28717803 |
T |
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| Q |
194 |
aggttcttgag |
204 |
Q |
| |
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||||||||||| |
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| T |
28717802 |
aggttcttgag |
28717792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 28699532 - 28699410
Alignment:
| Q |
82 |
ccatttaacaaggttcatggcacccatctctttgattatcccagcttggacttgaggttcaatcaaattctcaatacagcgatgagcaatcatacaacta |
181 |
Q |
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||||| |||| |||||||||||| ||| |||||||||| | || || |||| ||||| |||||| || |||||||||| |||| || | |||| | | |
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| T |
28699532 |
ccattcaacatggttcatggcacacatgcctttgattatgcaagttttgactcaaggtttaatcaagttttcaatacagccatgatcagttataccaaaa |
28699433 |
T |
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| Q |
182 |
tagtgatgaaaaaggttcttgag |
204 |
Q |
| |
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|||| ||||| |||||||||||| |
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| T |
28699432 |
tagttatgaagaaggttcttgag |
28699410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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