View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_59 (Length: 220)
Name: NF14642_high_59
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_59 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2402207 - 2401988
Alignment:
| Q |
1 |
tgttcttgatctatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattattcttgaattttatttctttcctattcacttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2402207 |
tgttcttgatctatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattattcttgaattttatttctttcctattcacttca |
2402108 |
T |
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| Q |
101 |
gtaagttcattactcgctgttttatctaccgtagtccgtaatatgatttaatatgttgccatgcactgttcaggctcttctttcaggtatcaatatctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2402107 |
gtaagttcattactcgctgttttatctaccgtagtccgtaatatgatttaatatgttgccatgcactgttcaggctcttctttcaggtatcaatatctac |
2402008 |
T |
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| Q |
201 |
gacgttcccagttaccattc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
2402007 |
gacgttcccagttaccattc |
2401988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 2798615 - 2798662
Alignment:
| Q |
139 |
taatatgatttaatatgttgccatgcactgttcaggctcttctttcag |
186 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2798615 |
taatgtgatttaatatgttgccatgcactgttcaggctcttgtttcag |
2798662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 2798522 - 2798583
Alignment:
| Q |
5 |
cttgatctatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataatt |
66 |
Q |
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| T |
2798522 |
cttggtctatatgtcctgcagtgcttggtaattgctctgtactgcatttaaattttataatt |
2798583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 4247960 - 4248007
Alignment:
| Q |
139 |
taatatgatttaatatgttgccatgcactgttcaggctcttctttcag |
186 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4247960 |
taatgtgatttaatatgttgccatgcactgttcaggctcttgtttcag |
4248007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 4247867 - 4247931
Alignment:
| Q |
5 |
cttgatctatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattatt |
69 |
Q |
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|||| ||||||||||||||| ||||||||| ||||||| ||| |||| |||||||||||||||| |
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| T |
4247867 |
cttggtctatatgtcctgcagtgcttggtaattgctctgtactgcatttaaattttataattatt |
4247931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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