View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_high_62 (Length: 216)
Name: NF14642_high_62
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_62 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 780255 - 780118
Alignment:
| Q |
62 |
taagagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaagttccatggataattggcataaaagttgggtagtat |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
780255 |
taagagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaggttccatggataattggcataaaagttgggtagtat |
780156 |
T |
|
| Q |
162 |
tgtttggcatagtagcaatgcattaccacggtggcttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
780155 |
tgtttggcatagtagcaatgcattaccacggtggcttt |
780118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 4974356 - 4974491
Alignment:
| Q |
64 |
agagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaagttccatggataattggcataaaagttgggtagtattg |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4974356 |
agagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaggttccatggataattggcataaaagttgggtagtattg |
4974455 |
T |
|
| Q |
164 |
tttggcatagtagcaatgcattaccacggtggcttt |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4974456 |
tttggcatggtagcaatgcattaccacggtggcttt |
4974491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 23570743 - 23570878
Alignment:
| Q |
64 |
agagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaagttccatggataattggcataaaagttgggtagtattg |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23570743 |
agagcaccattatcggttgttttgagcaagtctctttacaataaccaaggctaatgtgtcaggttccatggataattgacataaaagttgggtagtattg |
23570842 |
T |
|
| Q |
164 |
tttggcatagtagcaatgcattaccacggtggcttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23570843 |
tttggcatagtagcaatgcattaccacggtggcttt |
23570878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 32485812 - 32485674
Alignment:
| Q |
61 |
ctaagagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaagttccatggataattggcataaaagttgggtagta |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32485812 |
ctaagagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaggttccatggataattggcataaaagttgggtagta |
32485713 |
T |
|
| Q |
161 |
ttgtttggcatagtagcaatgcattaccacggtggcttt |
199 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||| |||| |
|
|
| T |
32485712 |
ttgtttggcatggtagcactacattaccacggtgccttt |
32485674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 15877947 - 15877880
Alignment:
| Q |
64 |
agagcaccattatcggttgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaagttcca |
131 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15877947 |
agagcaccattatcgatcgttttgagcaagtatcttcacaataaccaaggctaatgtgtcaggttcca |
15877880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 1049501 - 1049452
Alignment:
| Q |
15 |
cataggagattaggagttatattattatctgaaacactagttgcatctaa |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1049501 |
cataggagattaggagttatattattatctgaaacactagttgcatctaa |
1049452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University