View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_64 (Length: 211)
Name: NF14642_high_64
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2402002 - 2401801
Alignment:
| Q |
1 |
tcccagttaccattcgttagtactgcaactgtcacgaatttcattgaattgtggtttatcttatctcagtctagtaacaacttatgatgttgaggctgtg |
100 |
Q |
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| T |
2402002 |
tcccagttaccattcgttagtactgcaactgtcacgaatttcattgaattgtggtttatcttatctcagtctagtaacaacttatgatgttgaggctgtg |
2401903 |
T |
|
| Q |
101 |
gttagtaccgtttttggaggtagtactctaaggttataatgtgtctgcttagctgtttatttatttcaatgtttacttagcaccgtttgtttacacaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2401902 |
gttagtaccgtttttggaggtagtactctaaggttataatgtgtctgcttagctgtttatttatttcaatgtttacttagcaccgtttgtttacacaatt |
2401803 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
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|
| T |
2401802 |
tt |
2401801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 2798692 - 2798810
Alignment:
| Q |
11 |
cattcgttagtactgcaactgtcacgaatttcattgaattgtggtttatcttatctcagtctagtaacaacttatgatgttgaggctgtggttagtaccg |
110 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||| ||| |
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| T |
2798692 |
cattcgttagtactacaactgtcacgaatttcatcatattgtggtttatcttatctcagtctagttacaacttatgatgtcgaggttgtggctagcgccg |
2798791 |
T |
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| Q |
111 |
tttttggaggtagtactct |
129 |
Q |
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||||||||||||||||||| |
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| T |
2798792 |
tttttggaggtagtactct |
2798810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 2798818 - 2798870
Alignment:
| Q |
151 |
agctgtttatttatttcaatgtttacttag-caccgtttgtttacacaatttt |
202 |
Q |
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| T |
2798818 |
agctgttaatttatttcgatgtttactcaggcactgtttgtttacacaatttt |
2798870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 4248037 - 4248155
Alignment:
| Q |
11 |
cattcgttagtactgcaactgtcacgaatttcattgaattgtggtttatcttatctcagtctagtaacaacttatgatgttgaggctgtggttagtaccg |
110 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||| ||| |
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| T |
4248037 |
cattcgctagtactacaactgtcacgaatttcatcatattgtggtttatcttatctcagtctagttacaacttatgatgtcgaggttgtggctagcgccg |
4248136 |
T |
|
| Q |
111 |
tttttggaggtagtactct |
129 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
4248137 |
tttttggaggtagtactct |
4248155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 4248164 - 4248216
Alignment:
| Q |
151 |
agctgtttatttatttcaatgtttacttag-caccgtttgtttacacaatttt |
202 |
Q |
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||||||| ||||||||| ||||||||| || ||| |||||||||||||||||| |
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|
| T |
4248164 |
agctgttaatttatttcgatgtttactcaggcactgtttgtttacacaatttt |
4248216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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