View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_high_66 (Length: 207)
Name: NF14642_high_66
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_66 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 14207903 - 14208020
Alignment:
| Q |
71 |
tcaattactttcattaacgtcaaagggcaccatatgtcaatcggagcannnnnnnagtagatacctaaggctgagttagatacctataagcctaaagctg |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14207903 |
tcaattactttcattaacctcaaagggcaccatatgtcaattggagcatttttt-agtagatacctaaggctgagttagatacctataagcctgaagctg |
14208001 |
T |
|
| Q |
171 |
agagttttcacgctataat |
189 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14208002 |
agagttttcacgctataat |
14208020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 2368528 - 2368595
Alignment:
| Q |
126 |
agtagatacctaaggctgagttagatac----ctataagcctaaagctgagagttttcacgctataat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2368528 |
agtagatacctaaggctgagttagatacttaattataagcctgaagctgagagttttcacgctataat |
2368595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 42302302 - 42302369
Alignment:
| Q |
126 |
agtagatacctaaggctgagttagatac----ctataagcctaaagctgagagttttcacgctataat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||||| |
|
|
| T |
42302302 |
agtagatacctaaggctgagttagatacttaattataagcctgaaactaagagttttcacgctataat |
42302369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University