View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_high_9 (Length: 489)
Name: NF14642_high_9
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 10036120 - 10035667
Alignment:
| Q |
19 |
tcacgcacccaccagcttctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaa |
118 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10036120 |
tcacgcacccaccagctgctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaa |
10036021 |
T |
|
| Q |
119 |
cattgatgcctcattttcgcctgtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttc |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10036020 |
cattgatgcctcattttcgcctgtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttc |
10035921 |
T |
|
| Q |
219 |
tcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatgcggtttgacaacgtggactttgtagtcg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10035920 |
tcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatgcggtttgacaacgtggactttgtggtcg |
10035821 |
T |
|
| Q |
319 |
actcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcagcatgtcaggatatgatttcctcctactt |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10035820 |
actcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcaatatgtcaggatatgatttcctcctact- |
10035722 |
T |
|
| Q |
419 |
atatatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10035721 |
---tatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
10035667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 10096499 - 10096035
Alignment:
| Q |
19 |
tcacgcacccaccagcttctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaa |
118 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10096499 |
tcacgcacccactagctgctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaa |
10096400 |
T |
|
| Q |
119 |
cattgatgcctcattttcgcct-----------gtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaa |
207 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10096399 |
cattgatgcctcattttcgcctcattttcgcctgtgcagaacggtacctgtttcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaa |
10096300 |
T |
|
| Q |
208 |
ccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatgcggtttgacaacgtgga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10096299 |
ccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatgcggtttgacaacgtgga |
10096200 |
T |
|
| Q |
308 |
ctttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcagcatgtcaggatatgatt |
407 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10096199 |
ctttgtggtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcagcatgtcaggatatgatt |
10096100 |
T |
|
| Q |
408 |
tcctcctacttatatatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
476 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10096099 |
tcctcctact----tatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
10096035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 397
Target Start/End: Original strand, 49077121 - 49077326
Alignment:
| Q |
192 |
tatatgctagcgaaaaccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatgc |
291 |
Q |
| |
|
|||||| |||| || ||||||| | ||||||| ||||| ||||||| |||| ||||| || |||| |||||||| ||||||| || ||||||| |
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| T |
49077121 |
tatatgttagcaaagaccatgaacatctcacccttggttgctgtcaacgtaggggaagcactagctctttttcatgctttacaatggctatgcgacatgc |
49077220 |
T |
|
| Q |
292 |
ggtttgacaacgtggactttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtg-atgttacagagttcggccaaattattgcag |
390 |
Q |
| |
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| |||||||||||||| ||||||||||||||||||||||| || |||| | | |||| | ||||| ||||||| |||||||||||||| ||||||| |
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| T |
49077221 |
gttttgacaacgtggattttgtagtcgactcaaaaattacagcagatgatatcttatcga-acaaagtgaatgttactgagttcggccaaataattgcag |
49077319 |
T |
|
| Q |
391 |
catgtca |
397 |
Q |
| |
|
||||||| |
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|
| T |
49077320 |
catgtca |
49077326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 29358546 - 29358584
Alignment:
| Q |
360 |
gatgttacagagttcggccaaattattgcagcatgtcag |
398 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||| |
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| T |
29358546 |
gatgttactgagttcggccaaataattgcagcatgtcag |
29358584 |
T |
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Back To:
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