View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_10 (Length: 485)
Name: NF14642_low_10
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 35 - 471
Target Start/End: Original strand, 3342898 - 3343332
Alignment:
| Q |
35 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttatcttatatcattccctcttcttttatttga |
134 |
Q |
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| T |
3342898 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttat-----atcattccctcttcttttatttga |
3342992 |
T |
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| Q |
135 |
cttaaat---gtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacatgaagatt |
231 |
Q |
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| T |
3342993 |
cttaaattatgtatccaagccggactttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacattaagatt |
3343092 |
T |
|
| Q |
232 |
tgctacaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcctccaccaat |
331 |
Q |
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| T |
3343093 |
tgctacaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcctccaccaat |
3343192 |
T |
|
| Q |
332 |
tctgtattagagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaaatcacata |
431 |
Q |
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| T |
3343193 |
tctgtattggagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaaatcacata |
3343292 |
T |
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| Q |
432 |
atccatcagttagaacaagttcaagaaactctttcttctt |
471 |
Q |
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| T |
3343293 |
atccatcagttagaacaagttcaagaaactctttcttctt |
3343332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 130 - 471
Target Start/End: Original strand, 3367479 - 3367820
Alignment:
| Q |
130 |
tttgacttaaatgtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacatgaaga |
229 |
Q |
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||||| ||||||| ||||||||| |||| ||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||| || ||| | |
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| T |
3367479 |
tttgatttaaatgaatccaagcccaactttaggtgtcatgaacctcattctggtgaaacctatcttactattatgtttgaatgggaagttattatggatt |
3367578 |
T |
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| Q |
230 |
tttgctacaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcctccacca |
329 |
Q |
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||| || | ||||||||||||||||||||| ||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
3367579 |
attgatatagtatgtttcttctttgggaatgtttgaggtgaaaaacactttgtagttctacccaaaggaagatatattgctttgtttatatcttcaacca |
3367678 |
T |
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| Q |
330 |
attctgtattagagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaaatcaca |
429 |
Q |
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| T |
3367679 |
aatctgtattagaatcaaatctatttttggagttgtaaaacatctcaaaaactttcaagcatgcgagatgaagttgtttgctaggtttaggtaaatcaca |
3367778 |
T |
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| Q |
430 |
taatccatcagttagaacaagttcaagaaactctttcttctt |
471 |
Q |
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||||||||| |||||||||||||||| | |||||||||||| |
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| T |
3367779 |
caatccatcaattagaacaagttcaaggagctctttcttctt |
3367820 |
T |
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