View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_14 (Length: 467)
Name: NF14642_low_14
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 3 - 448
Target Start/End: Original strand, 42638937 - 42639386
Alignment:
| Q |
3 |
gtccaacaatatgatatcatttattcaaatatatataccaagtat----tgtatggctagctagcttagcaagtaaggttatcaccaggagcaacaccca |
98 |
Q |
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| T |
42638937 |
gtccaacattatgatatcatttattcaaatatatatactaagtatatattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacaccca |
42639036 |
T |
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| Q |
99 |
actcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgc |
198 |
Q |
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| T |
42639037 |
actcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgc |
42639136 |
T |
|
| Q |
199 |
accaaaaccttggttgatgacaccgtgcacattattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgag |
298 |
Q |
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| T |
42639137 |
accaaaaccttggttgatgacaccgtgcacgttattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgag |
42639236 |
T |
|
| Q |
299 |
ttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42639237 |
ttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagatagttgaatcggtccacgaccatagtaacctttgttaggggcac |
42639336 |
T |
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| Q |
399 |
atggccactctgtgttgccttcatcacagtagtcctttgatggaccatca |
448 |
Q |
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| T |
42639337 |
atggccactctgtgttgccttcatcacagtagtcctttgatggaccatca |
42639386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 45 - 447
Target Start/End: Original strand, 42633903 - 42634308
Alignment:
| Q |
45 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
144 |
Q |
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| T |
42633903 |
tattgtatggattgctagcttagcagttaagcttatcaccaggagcaacacccagttgactacaatattgagtgtagtaatcaacacgagccttaactgt |
42634002 |
T |
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| Q |
145 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttg---gttgatgacaccgtgcacattattcatccaa |
241 |
Q |
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| T |
42634003 |
gttggggtcaacaccgtcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttcatgacattgtgcacatgattcatccaa |
42634102 |
T |
|
| Q |
242 |
taccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagt |
341 |
Q |
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| T |
42634103 |
taccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagctggtccgtaat |
42634202 |
T |
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| Q |
342 |
tgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagtagtcctttgatgg |
441 |
Q |
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| T |
42634203 |
taaagttccaagataattgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgctttcatcgcagtagtcctttgatgc |
42634302 |
T |
|
| Q |
442 |
accatc |
447 |
Q |
| |
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|||||| |
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| T |
42634303 |
accatc |
42634308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 42628384 - 42628551
Alignment:
| Q |
45 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
144 |
Q |
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|||||||||| | |||||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42628384 |
tattgtatggattgctagcttagaaagtaagcttatcaccaggagcaacacccaattgactacaatattgagtgtagcaaccaacacgagtctgaactgt |
42628483 |
T |
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| Q |
145 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
212 |
Q |
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| T |
42628484 |
agttggcttagcaccatcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
271 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
321 |
Q |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 448
Target Start/End: Original strand, 42628651 - 42628741
Alignment:
| Q |
358 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagtagtcctttgatggaccatca |
448 |
Q |
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|||||||||||||| ||||||| | ||||||||||||||||||| |||||| |||| ||||||||||||||| | ||||| ||||||| |
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| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatgtgtactctgcattgctttcatcacagtagtcttatgatgcaccatca |
42628741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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