View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_15 (Length: 453)
Name: NF14642_low_15
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 22050110 - 22050529
Alignment:
| Q |
19 |
gtagtcatatccagtgcttctcacaaagttttcaaattcagtattcaatgactaaataaagtaataaaaatatgttagattgatacttgttatgttgaaa |
118 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22050110 |
gtagtcatatccagtgcttctcacaaagtttgcaaagtcagtcttcaatgactaaataaagtaataaaaatatgttagattgatacttgttatgttgaaa |
22050209 |
T |
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| Q |
119 |
ataacaaatgaattccaatttgtgttcaagtaaagatataaaggaacttactaatttaaattttttggctgaaaactttgtgagggtaacttgaaatggt |
218 |
Q |
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| T |
22050210 |
acaacaaatgaattccaatttgtgttcaagtaa-gatataaaggaacttactaatttaaatttttcggctgaaaactttgtgagggtaacttgaaatggt |
22050308 |
T |
|
| Q |
219 |
gccggctcaagcgcactctatcgacagctatgataattcggtaattccaaaggattgaattgacattgtcctacatcaataccaaatagattttctccat |
318 |
Q |
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||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22050309 |
gccggctcaagcgcactgtatcgatagctatgataatttcataattccaaaggattgaattgacgttgtcctacatcaataccaaatagattttctccat |
22050408 |
T |
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| Q |
319 |
gatatgtgagtaaaagaaacttgttgccattgataccnnnnnnngctctcaactcaatccatccttttgtgattaatggatgattgtagttttgattgaa |
418 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22050409 |
gatatgtgagtaaaagaaacctgttgccattgataccaaaaaaagctctcaactcaatccatccttttgtgattaatggatgattgtagttttgattgaa |
22050508 |
T |
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| Q |
419 |
ctcgacattcatgcaacggcc |
439 |
Q |
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||||||||||||||||||||| |
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| T |
22050509 |
ctcgacattcatgcaacggcc |
22050529 |
T |
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