View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14642_low_16 (Length: 446)

Name: NF14642_low_16
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14642_low_16
NF14642_low_16
[»] chr6 (20 HSPs)
chr6 (13-332)||(1831952-1832271)
chr6 (58-317)||(1827215-1827460)
chr6 (47-317)||(6465044-6465314)
chr6 (14-326)||(6473207-6473519)
chr6 (13-326)||(1839049-1839364)
chr6 (14-288)||(6526109-6526386)
chr6 (47-317)||(6457084-6457354)
chr6 (54-191)||(1845847-1845983)
chr6 (48-254)||(1841986-1842192)
chr6 (159-332)||(1828190-1828363)
chr6 (388-431)||(1832401-1832444)
chr6 (14-74)||(13035906-13035966)
chr6 (13-63)||(1827156-1827206)
chr6 (342-383)||(1832301-1832342)
chr6 (13-74)||(1822309-1822370)
chr6 (13-189)||(6505319-6505495)
chr6 (388-422)||(1847047-1847081)
chr6 (47-189)||(6516304-6516446)
chr6 (388-420)||(1842425-1842457)
chr6 (388-432)||(1846091-1846135)
[»] chr7 (4 HSPs)
chr7 (47-168)||(46383276-46383398)
chr7 (16-144)||(3753994-3754122)
chr7 (247-317)||(46383132-46383202)
chr7 (109-144)||(9665567-9665602)
[»] chr1 (1 HSPs)
chr1 (95-170)||(35244270-35244345)
[»] chr4 (1 HSPs)
chr4 (109-144)||(13536591-13536626)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 1831952 - 1832271
Alignment:
Q  13 tggtgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttgg 112  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  1831952 tggtgttgatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttgg 1832051  T
Q  113 ggtagaaagcataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagc 212  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  1832052 ggtagagagtataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacgcacgtcaatgatgttttgagc 1832151  T
Q  213 tttgtaaactacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832152 tttgtaaactacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagc 1832251  T
Q  313 cttgacaggtatggttacta 332  Q
    |||||| |||||||||||||    
T  1832252 cttgactggtatggttacta 1832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 58 - 317
Target Start/End: Original strand, 1827215 - 1827460
Alignment:
Q  58 tttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactcattgaggatttt 157  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||  ||||||    
T  1827215 tttaggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcactcattgccgatttt 1827314  T
Q  158 atgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaagtgaattcactg 257  Q
    ||||||| |||||||||||| |||              || ||| | ||||| |||||||||||||| ||||| ||||| |||| ||| |||||||||||    
T  1827315 atgacctcgagtagaaattcgaac--------------tctaaggtattttgtgctttgtaaactacactcttgggctggagggctaactgaattcactg 1827400  T
Q  258 atggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 317  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||    
T  1827401 atggaagaaatcaagagagcgctagtgaagcaatgaatgcatattattctgcagccttga 1827460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 47 - 317
Target Start/End: Complemental strand, 6465314 - 6465044
Alignment:
Q  47 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactca 146  Q
    ||||||||||||||||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  6465314 catcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagcttattcactca 6465215  T
Q  147 ttgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaag 246  Q
    | |  |||||||||| |||||| |||||| | ||||| |||||||| |||| ||| ||||| || |||| |||| | |  || | ||| | |||| |||     
T  6465214 tggctgattttatgaacttgagcagaaatccgaactcgaattacacccgtctaaggtgtttcgatctttttaaattgcattcgtgggccggagggttaac 6465115  T
Q  247 tgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 317  Q
    ||| |||   ||||||||||| |||||||  |||||||||||  |||||||||| ||||| ||||| ||||    
T  6465114 tgagttcggagatggaagaaatcaagagagtactagtgaagctgtgaatgcatactattcagcagctttga 6465044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 6473207 - 6473519
Alignment:
Q  14 ggtgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggg 113  Q
    |||| |||||||||||| |||||| | || || ||||||||||||||||| ||||||||||   |||||||||||||| | |||||||||||| ||||||    
T  6473207 ggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggg 6473306  T
Q  114 gtagaaagcataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagct 213  Q
    |||  ||  ||||||||||||||||| ||||||| || ||||||||||||||||| | ||| || || |||||||| || | |  ||| |||||||| ||    
T  6473307 gtaagaaatataagcctcaagcctatgcactcatggaagattttatgaccttgagcaaaaactcgaattcaaattatactcctttaaggtgttttgatct 6473406  T
Q  214 ttgtaaactacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagcc 313  Q
    ||  ||||| |  |||| ||| | |||| |||  || ||  | |||||||||||||||||||  |||||||||||  |||||||||| |||||||||||     
T  6473407 ttacaaactgcattcttgggccggagggttaaccgagtttgcggatggaagaaaccaagagagtactagtgaagccgtgaatgcatactattctgcagcg 6473506  T
Q  314 ttgacaggtatgg 326  Q
    ||||  |||||||    
T  6473507 ttgatcggtatgg 6473519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 1839049 - 1839364
Alignment:
Q  13 tggtgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttgg 112  Q
    ||||| ||||||||||||||||||| |  | || |||||||||||||||||||| ||||||| | ||||||||||||   ||||||||||||||||||||    
T  1839049 tggtgctgatttcgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgca--caaagattgatccaatttgg 1839146  T
Q  113 ggtagaaagcataa----gcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgtttt 208  Q
    |||| |||   |||    ||||||| |||||||||||||||   ||||||||||||  ||||||||||| ||||| |||||||   ||| ||| |||||     
T  1839147 ggtataaaatttaattaagcctcaaacctattcactcattgcaaattttatgacctcaagtagaaattcgaactctaattacatgtgtctaaggtgttta 1839246  T
Q  209 gagctttgtaaactacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctg 308  Q
    || |||| |||| ||| ||||| ||| | |||| |||  || ||| ||||||| ||||| ||||| | |||||||||| || |||||||||| ||||||     
T  1839247 gatctttataaattacactcttgggccggagggctaacagagttcgctgatggtagaaatcaagatagcactagtgaatcagtgaatgcatactattctt 1839346  T
Q  309 cagccttgacaggtatgg 326  Q
    |||| ||||  |||||||    
T  1839347 cagctttgattggtatgg 1839364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 6526386 - 6526109
Alignment:
Q  14 ggtgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggg 113  Q
    |||| |||||| ||||| ||| || | || || ||||||||||||||||||||||||||||   |||||||||||||| | ||||||||||| |||||||    
T  6526386 ggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggg 6526287  T
Q  114 gtagaaagcataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaa---attacacacgtcaaagatgttttga 210  Q
    |||||||| ||||| |||||||||||||  |||| |  ||||||||||   |||| |||||||||||| | |   ||||||| | || ||| ||||| ||    
T  6526286 gtagaaagtataagtctcaagcctattctgtcatggctgattttatgaatctgagcagaaattcaaaccctagttattacacgcatctaaggtgtttcga 6526187  T
Q  211 gctttgtaaactacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagc 288  Q
     || | |||| ||| ||||| ||||| |||| |||  |||||||||||||||||||| |||||||  || ||||||||    
T  6526186 tctgtataaattacactcttgggctggagggctaacagaattcactgatggaagaaatcaagagagtaccagtgaagc 6526109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 317
Target Start/End: Complemental strand, 6457354 - 6457084
Alignment:
Q  47 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactca 146  Q
    ||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||  |||||| |||||| |||| |||||||| ||||||||||    
T  6457354 catcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaaagtataaacctcaagcttattcactca 6457255  T
Q  147 ttgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaag 246  Q
    | |  |||||  ||| |||  | ||||| |||||||||||||| ||||||  ||| ||||| || |||| |||| | |  |||| ||||| |||  |||     
T  6457254 tggcagatttcctgaacttaggaagaaaatcaaactcaaattatacacgtttaaggtgtttcgatctttataaatttcattcttgggctggaggactaat 6457155  T
Q  247 tgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 317  Q
     |||||  | ||||||||||| |||||||  |||||||||||  |||||||||| ||| ||||||| ||||    
T  6457154 cgaatttgcagatggaagaaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattga 6457084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 1845847 - 1845983
Alignment:
Q  54 atcatttaggatactttctcttacgaa-ttgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactcattgagg 152  Q
    |||||||| |||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||   ||||||||||||||||| ||||||||  |    
T  1845847 atcatttacgatactttctct-acgaaatttcagtgcttgcaaagattgatccaatttggggtggaaaatttaagcctcaagcctatttactcattgcag 1845945  T
Q  153 attttatgaccttgagtagaaattcaaactcaaattaca 191  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  1845946 attttatgacc-tgagtagaaattcaaactctaattaca 1845983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 1841986 - 1842192
Alignment:
Q  48 atcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactcat 147  Q
    |||| ||||||||| | ||||||||||   |||||||| ||| | | ||||||||||||||||||| || |||| || || ||||||   ||||||||||    
T  1841986 atcaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcat 1842085  T
Q  148 tgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaagt 247  Q
      |||||||||||||||||||||||||||||||||| ||| ||||  ||| ||| ||||| || ||||||||| ||| |||||  |||| |||| ||| |    
T  1842086 gaaggattttatgaccttgagtagaaattcaaactctaatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagctggagggctaact 1842185  T
Q  248 gaattca 254  Q
    |||||||    
T  1842186 gaattca 1842192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 1828190 - 1828363
Alignment:
Q  159 tgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaagtgaattcactga 258  Q
    |||||||||||||||| || |||   ||||||||  |||  || ||||| || |||| |||| ||| ||||| ||| | |||| |||  |||||| ||||    
T  1828190 tgaccttgagtagaaactctaacaataattacacgtgtctgaggtgtttcgatctttataaattacactcttgggccggagggctaacagaattcgctga 1828289  T
Q  259 tggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttgacaggtatggttacta 332  Q
    ||| ||||| ||||||| ||||||||| ||| |||||||||| ||||| ||||||||||  |||||||||||||    
T  1828290 tggtagaaatcaagagagcactagtgatgcagtgaatgcatactattccgcagccttgattggtatggttacta 1828363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 388 - 431
Target Start/End: Original strand, 1832401 - 1832444
Alignment:
Q  388 aaagaatgtcggctcggcattcagctcttaccatttcttcctat 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1832401 aaagaatgtcggctcggcattcagctcttaccatttcttcctat 1832444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 13035906 - 13035966
Alignment:
Q  14 ggtgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctct 74  Q
    |||| ||||||||||||||||||| | || |||||||||||||||||||| ||||||||||    
T  13035906 ggtgctgatttcgggtttggaatttataatgaccatcattatcatttaggttactttctct 13035966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 1827156 - 1827206
Alignment:
Q  13 tggtgttgatttcgggtttggaattaagaacgaccatcattatcatttagg 63  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  1827156 tggtgctgatttcgggtttggaatttataacgaccatcattatcatttagg 1827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 1832301 - 1832342
Alignment:
Q  342 gaaaggagaaaatatgtacgagaaagtgtttactaaaagtat 383  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  1832301 gaaaggagaaaatatgtatgagaaagtgtttactaaaagtat 1832342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 1822309 - 1822370
Alignment:
Q  13 tggtgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctct 74  Q
    ||||| |||||| |||||| ||||| | || ||||||||||||||||||| |||||||||||    
T  1822309 tggtgctgattttgggttttgaatttataatgaccatcattatcatttagaatactttctct 1822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 6505495 - 6505319
Alignment:
Q  13 tggtgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacg-aattgcagtgcttccaaagattgatccaatttg 111  Q
    ||||| ||||||||| || |||||| | || || ||||| | ||| |||||||| ||||| ||||| ||| |||||||||  |||||| |||||||  ||    
T  6505495 tggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttct-ttacgcaatagcagtgcttgtaaagatcgatccaacatg 6505397  T
Q  112 gggtagaaagcataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaatta 189  Q
    |||||| ||  ||||| ||||||||||||||||  | || |||||||||| ||| || | | | || |||||||||||    
T  6505396 gggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcgaactcaaatta 6505319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 1847047 - 1847081
Alignment:
Q  388 aaagaatgtcggctcggcattcagctcttaccatt 422  Q
    ||||||||||||||||| |||||||||||||||||    
T  1847047 aaagaatgtcggctcggaattcagctcttaccatt 1847081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 6516304 - 6516446
Alignment:
Q  47 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactca 146  Q
    ||||||||||| |||||||| ||||| |   ||||||||||||||   ||||||||||||   |||||||| ||| |||||   ||| |||||||||| |    
T  6516304 catcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctattcactta 6516403  T
Q  147 ttgaggattttatgaccttgagtagaaattcaaactcaaatta 189  Q
    | || || ||||||| ||| |||  ||| || |||||||||||    
T  6516404 tggaagactttatgaacttaagtttaaaatcgaactcaaatta 6516446  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 1842425 - 1842457
Alignment:
Q  388 aaagaatgtcggctcggcattcagctcttacca 420  Q
    ||||||||| |||||||||||||||||||||||    
T  1842425 aaagaatgttggctcggcattcagctcttacca 1842457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 1846135 - 1846091
Alignment:
Q  388 aaagaatgtcggctcggcattcagctcttaccatttcttcctatt 432  Q
    |||||||||||||| |||||| ||||||| |||||| ||||||||    
T  1846135 aaagaatgtcggcttggcattgagctcttgccattttttcctatt 1846091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 46383398 - 46383276
Alignment:
Q  47 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctc-aagcctattcactc 145  Q
    |||||||||||||||||||| | |||||   ||||| |||||||  | ||||||||||| ||||||||||| ||| ||||| ||| |||| |||||||||    
T  46383398 catcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtctcaaagcttattcactc 46383299  T
Q  146 attgaggattttatgaccttgag 168  Q
    || || ||| |||||| ||||||    
T  46383298 atggaagatattatgaacttgag 46383276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 3753994 - 3754122
Alignment:
Q  16 tgttgatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggt 115  Q
    ||||||||| || ||||||||| | || || ||||||||||||||||| || ||||| |   ||||||| || ||| |||||||||||||| |||||||     
T  3753994 tgttgattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttgggga 3754093  T
Q  116 agaaagcataagcctcaagcctattcact 144  Q
      |||| |||| || ||||| ||||||||    
T  3754094 caaaagtataaaccacaagcttattcact 3754122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 46383202 - 46383132
Alignment:
Q  247 tgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 317  Q
    ||||||||||||||||||||| ||| |||  ||||||||| |  |||||||||| ||||||||||| ||||    
T  46383202 tgaattcactgatggaagaaatcaaaagagtactagtgaaactttgaatgcatactattctgcagctttga 46383132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 9665567 - 9665602
Alignment:
Q  109 ttggggtagaaagcataagcctcaagcctattcact 144  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9665567 ttggggtagaaagtataagcctcaagcctattcact 9665602  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 35244270 - 35244345
Alignment:
Q  95 aagattgatccaatttggggtagaaagcataagcctcaagcctattcactcattgaggattttatgaccttgagta 170  Q
    ||||||||||||| ||||||||| ||| ||||  |||||||||||||||||||  | |||||||||| ||||||||    
T  35244270 aagattgatccaacttggggtaggaagtataaatctcaagcctattcactcatgaaagattttatgaacttgagta 35244345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 13536591 - 13536626
Alignment:
Q  109 ttggggtagaaagcataagcctcaagcctattcact 144  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13536591 ttggggtagaaagtataagcctcaagcctattcact 13536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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