View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_17 (Length: 422)
Name: NF14642_low_17
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 44655068 - 44655457
Alignment:
| Q |
16 |
aaatattctatcatttcttggttttcaaattagccacacaacttatgccatnnnnnnnntgtaactcgttcccttttcttcccaaacctgcaaaaatttg |
115 |
Q |
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| T |
44655068 |
aaatattctatcatttcttggttttcaaattagccacacaacttatgccataaaaaaaatgtaaccctttcccttttcttcccaaacctgcaaaaatttg |
44655167 |
T |
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| Q |
116 |
aagcatagtgtcatgaatgtttgtcccatatactagacctaaatttggtctttggcattgcctattcatgcaggattggcttctgtttgatgcacgtgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44655168 |
aagcatagtgtcatgaatgtttgtcccatatactagacctaaatttggtctttggcattgcctattcatgcaggattggcttctgtttgatgcacatgtt |
44655267 |
T |
|
| Q |
216 |
cttattgatatgatat-tttgtgatgtcgaacatgacttgtttattatcatataattattatgtttatagatctgtctatgttagagtagatttgtctat |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44655268 |
cttattgatatgatatctttgtgatgtcgaacatgacttgtttattatcatataattattatgtttatagatctgtctatgttagagtagatttgtctat |
44655367 |
T |
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| Q |
315 |
gtttgtacgttcagatatctcttctaacatgtcatctaattgaatgattatgaatgaatgtatatgttcaccaacgattatacgttgatagtat |
408 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |
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| T |
44655368 |
gtttgtacgttcagatatctcttctgacatgtcatctaattgaatgatt----atgaatgtatatgttcaccaatgattatacgttgattgtat |
44655457 |
T |
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