View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_18 (Length: 417)
Name: NF14642_low_18
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 24 - 404
Target Start/End: Complemental strand, 2875136 - 2874758
Alignment:
| Q |
24 |
cgcagaaaaagtgtcatagtaattgttgccattatagaaacctaaatatcatagagagagagaagaaaataaaaaagttgaaaccatgcatgcatgttaa |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
2875136 |
cgcagaaaaagtgtcatagtaattgttgccattatagaaacctaaatatcatagagagaga--agaaaatgaaaaagttgaaaccatgcatgcatgttaa |
2875039 |
T |
|
| Q |
124 |
acaaaaagcagatattatagaaataaagctagaactcacttgaaccatcttaaagaggtaaatgaatgaatttcttttcataagcaaaaactctcttgag |
223 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875038 |
acaaaaagtagatattatagaaataaagctagaactcacttgaaccatcttaaagaggtaaatgaatgaatttcttttcataagcaaaaactctcttgag |
2874939 |
T |
|
| Q |
224 |
atgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattatttgacttgtcaaatggaatttcaagctctt |
323 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874938 |
atgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattatttgacttgtcaaatggaatttcaagctctt |
2874839 |
T |
|
| Q |
324 |
ctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaattgagtaactgttacaaacctatatggttcatctc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874838 |
ctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaattgagtaactgttacaaacctatatggttcatctc |
2874758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 170 - 398
Target Start/End: Complemental strand, 2884860 - 2884632
Alignment:
| Q |
170 |
atcttaaagaggtaaatgaatgaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttag |
269 |
Q |
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||||| |||| ||||| || ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
2884860 |
atcttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttag |
2884761 |
T |
|
| Q |
270 |
ttgttaatgctgctggatgattatttgacttgtcaaatggaatttcaagctcttctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaa |
369 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||| ||||||| ||| | || | ||||||||| | || | |||||||| ||||| |
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| T |
2884760 |
ttgttaatgctgctggatgattcttagacttgtcaaatggaattgcaagctcatctcctgttttccttccaacatggtatgattgaaatgcctcagcaaa |
2884661 |
T |
|
| Q |
370 |
ttgagtaactgttacaaacctatatggtt |
398 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |
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|
| T |
2884660 |
ttgagtaacagttacaaacctgtatggtt |
2884632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 170 - 398
Target Start/End: Original strand, 2899700 - 2899928
Alignment:
| Q |
170 |
atcttaaagaggtaaatgaatgaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttag |
269 |
Q |
| |
|
||||| |||| ||||| || ||||| ||||||||||||||| | |||||||||| |||||||||||| ||||| |||||||||||||| |||||||||| |
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|
| T |
2899700 |
atcttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttag |
2899799 |
T |
|
| Q |
270 |
ttgttaatgctgctggatgattatttgacttgtcaaatggaatttcaagctcttctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaa |
369 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||| ||||||| ||| | | || | ||||||||| | || | |||||||| ||||| |
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| T |
2899800 |
ttgttaatgctgctggatgattcttagacttgtcaaatggaattgcaagctcatctcttgttttccttccaacatggtatgattgaaatgcctcagcaaa |
2899899 |
T |
|
| Q |
370 |
ttgagtaactgttacaaacctatatggtt |
398 |
Q |
| |
|
||||||||| |||| |||||| ||||||| |
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|
| T |
2899900 |
ttgagtaacagttaaaaacctgtatggtt |
2899928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 44235905 - 44236023
Alignment:
| Q |
191 |
gaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgat |
290 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| |
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|
| T |
44235905 |
gaatttcttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggc |
44236004 |
T |
|
| Q |
291 |
tatttgacttgtcaaatgg |
309 |
Q |
| |
|
| || | |||||||||||| |
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|
| T |
44236005 |
tcttcgtcttgtcaaatgg |
44236023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 44212930 - 44213048
Alignment:
| Q |
191 |
gaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgat |
290 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| |
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|
| T |
44212930 |
gaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggc |
44213029 |
T |
|
| Q |
291 |
tatttgacttgtcaaatgg |
309 |
Q |
| |
|
| || | |||||||||||| |
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|
| T |
44213030 |
tcttcgtcttgtcaaatgg |
44213048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 44225091 - 44225209
Alignment:
| Q |
191 |
gaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgat |
290 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| |
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| T |
44225091 |
gaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggc |
44225190 |
T |
|
| Q |
291 |
tatttgacttgtcaaatgg |
309 |
Q |
| |
|
| || | |||||||||||| |
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|
| T |
44225191 |
tcttcgtcttgtcaaatgg |
44225209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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