View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_2 (Length: 605)
Name: NF14642_low_2
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 41 - 583
Target Start/End: Original strand, 48876664 - 48877205
Alignment:
| Q |
41 |
acccctttttctatagggctagtcactagagatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
140 |
Q |
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| T |
48876664 |
acccctttttctatagggctagtcactagtgatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
48876763 |
T |
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| Q |
141 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcgttgcaaaattattaagaaatgccagtagatatgattttaccaaa |
240 |
Q |
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| T |
48876764 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcattgcaaaattattaagaaatgccagtagatatga-tttaccaaa |
48876862 |
T |
|
| Q |
241 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggacnnnnnnnnntctattcg |
340 |
Q |
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| T |
48876863 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggacaaaaaaaaatctattcg |
48876962 |
T |
|
| Q |
341 |
tatagccatgaacttactggccatctcgctgaagttcagagcaacctctttgcaatgcaccggattgccacagtgcctgctccatgccgagttctgtcag |
440 |
Q |
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| T |
48876963 |
tatagccatgaacttactggcgatctcgctgaagttcagagcaacctctttgcaatgcaccggattgccacagtgcctgctccatgacgagttctgtcag |
48877062 |
T |
|
| Q |
441 |
taaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtttggctacactatttgaagcttattcaaaccag |
540 |
Q |
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| T |
48877063 |
taaacccttcttaatttgttactttgcaactatcttcactacaacctgtatgaccaagcagagaagtttggctccactatttgaagcttattcaaaccag |
48877162 |
T |
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| Q |
541 |
ttcagtccttatttcttctacctcagaaaaattcggacaattc |
583 |
Q |
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| T |
48877163 |
ttcagtccttatttcttctacctcagaaaaattcggacaattc |
48877205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48876568 - 48876609
Alignment:
| Q |
1 |
tatgatgttgttgaaatgtgcagtcattttgatttctgttac |
42 |
Q |
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| T |
48876568 |
tatgatgttgttgaaatgtgcagtcattttgatttctgttac |
48876609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 8381420 - 8381353
Alignment:
| Q |
244 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgtta |
311 |
Q |
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| T |
8381420 |
ggccaaagcttgttcctcagctagcattgatcggctcaagaacttgaatagaagaactgttgatgtta |
8381353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 508
Target Start/End: Complemental strand, 8381008 - 8380942
Alignment:
| Q |
442 |
aaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
508 |
Q |
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| T |
8381008 |
aaacacttcttaatttgttacttcgtaactacctccactacaacctatatgatcaggcagagaagtt |
8380942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 53456860 - 53456785
Alignment:
| Q |
244 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatct |
319 |
Q |
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| T |
53456860 |
ggccaaagcttgttcttcagctagtgttgcttggctgaagaatgtgaacagaagaactgttgatgttattgcatct |
53456785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 437 - 508
Target Start/End: Complemental strand, 53456480 - 53456409
Alignment:
| Q |
437 |
tcagtaaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
508 |
Q |
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|||| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
53456480 |
tcaggaaacccttcttaatttgctgcttcgcaactatcttcactacaacctatatgaccaggcagagaagtt |
53456409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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