View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_22 (Length: 376)
Name: NF14642_low_22
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 44409576 - 44409922
Alignment:
| Q |
19 |
aagaagtattcacaacaattggaaaagtttatgtcctcacttttgcagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcatttgc |
118 |
Q |
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| T |
44409576 |
aagaagtattcacaacaattggaaaagtttatgtcctcacttttgcagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcatttgc |
44409675 |
T |
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| Q |
119 |
tggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggatt |
218 |
Q |
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| T |
44409676 |
tggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggatt |
44409775 |
T |
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| Q |
219 |
aggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatccca |
318 |
Q |
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| T |
44409776 |
aggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatccca |
44409875 |
T |
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| Q |
319 |
acaaccatacctaagtagtatatatgctgcaaatcaaaatgctaccttcat |
369 |
Q |
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| T |
44409876 |
acaaccatacctaagtag----tatgctgcaaatcaaaatgctaccttcat |
44409922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
263 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
304 |
Q |
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| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
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