View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_23 (Length: 364)
Name: NF14642_low_23
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 44925795 - 44926136
Alignment:
| Q |
7 |
aatatcctaggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatg |
106 |
Q |
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| T |
44925795 |
aatatcctaggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatg |
44925894 |
T |
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| Q |
107 |
tgtagaagttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagtctcgtctcaaaatttggaaagtccaacta |
206 |
Q |
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| T |
44925895 |
tgtagaagttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagtctcgtctcaaaatttggaaagtccaacta |
44925994 |
T |
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| Q |
207 |
gaagaggccatgacaaagactcagttgaaacacatttctcaagtgcttgcagagaatgacattggttgtgatgacttgaatactatcggtcattctgaca |
306 |
Q |
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| T |
44925995 |
gaagaggccatgacaaagactcagttgaaacacatttctcaagtgcttgcagagaataacattggttgtgatgacttgaatactatcggtcattctgaca |
44926094 |
T |
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| Q |
307 |
ctatgctactaagtaatcacatcaaagagattgccgcatctg |
348 |
Q |
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| T |
44926095 |
ctatgctactaagtaatcacatcaaagagattgccgcatctg |
44926136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 44933960 - 44934181
Alignment:
| Q |
15 |
aggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtgtagaag |
114 |
Q |
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| T |
44933960 |
aggatgtacagattgttccaaaagacattaaataaactttcaggatcagtgttgatactcggttcccggccttatgatttaaaatataactgtaccaaag |
44934059 |
T |
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| Q |
115 |
ttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagtctcgtctcaaaatttggaaagtccaactagaagaggc |
214 |
Q |
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| T |
44934060 |
tcaatgaaaaactcactatgttattcccttacaacatagagatcacaccacctcaagatgagactcatctcaaaatctggaaaagccaactaaaaaaggc |
44934159 |
T |
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| Q |
215 |
catgacaaagactcagttgaaa |
236 |
Q |
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| T |
44934160 |
catgaaaaagactcacttgaaa |
44934181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 32199384 - 32199565
Alignment:
| Q |
39 |
ctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtgtagaagttgatgaaaaactcactatgttat |
138 |
Q |
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| T |
32199384 |
ctattaaagaaactttcaggatcagtgttgatcctcggttcccagatttatgatttagaagataattgtaaaaaagttgatgaaaagcttgccatgttat |
32199483 |
T |
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| Q |
139 |
tcccttgcaacattgagatcaaaccgcctcaagat-gagtctcgtctcaaaatttggaaagtccaactagaagaggccatga |
219 |
Q |
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| T |
32199484 |
tcccttgcaacgttgagatcaaactgccttcagataaaaactcgtctcaaaatctggaaagcccaattataagaggctatga |
32199565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 32197004 - 32197091
Alignment:
| Q |
133 |
tgttattcccttgcaacattgagatcaaaccgcctcaaga-tgagtctcgtctcaaaatttggaaagtccaactagaagaggccatga |
219 |
Q |
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| T |
32197004 |
tgttattcccttgcaacgttgagatcaaactgccttaagattaaaactcgtctcaaaatctggaaagcccaattagaagaggctatga |
32197091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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