View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_24 (Length: 359)
Name: NF14642_low_24
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 33889469 - 33889801
Alignment:
| Q |
9 |
gaatatagtttgcagacctctaaattatgtttatgatttttggttaggtaaattcaagaaaaacatattcttcattacatttgcgaaaacaccaaagcta |
108 |
Q |
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| T |
33889469 |
gaatatggtttgcagacctctaaattatgtttatgatttttgattaggtaaattcaagaaaaacatgttcttcattacatttgcgaaaacaccaaagcta |
33889568 |
T |
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| Q |
109 |
aatgttatagtggagagactgtttaaacagaatagttacaaagttcctgattttcaaagcgaagaagacacgtttaaacaattggaacatctgatgaaag |
208 |
Q |
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| T |
33889569 |
aatgttatagtggagagactgtttaaacagactagttacaaagttcctgattttcaaagcgaagaagacacgtttaaccaattggaacatctgatgaaag |
33889668 |
T |
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| Q |
209 |
aaattgtgaagaaaggaccaatattgtttgtcctagacgatgtttggcaaggatcagaatcatttcttgacaattttgtgtttgatatcccaaactacaa |
308 |
Q |
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| T |
33889669 |
aaattgtgaagaaaggaccaatattgttggtcctagacgatgtttggcaaggatcagaatcatttcttgacaattttgtgtttgatatcccaaactacaa |
33889768 |
T |
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| Q |
309 |
gattttggttacatcaagatttaaaattcgaag |
341 |
Q |
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| T |
33889769 |
gattttggttacatcaagatttaaaattcgaag |
33889801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 49 - 330
Target Start/End: Original strand, 33867406 - 33867687
Alignment:
| Q |
49 |
tggttaggtaaattcaagaaaaacatattcttcattacatttgcgaaaacaccaaagctaaatgttatagtggagagactgtttaaacagaatagttaca |
148 |
Q |
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| T |
33867406 |
tggttaggtaaattcaatgaaaatattttcttcattacctttgcaaaaacaccaaagctgaatactatagtgcagaagctgtatcaacacactggttact |
33867505 |
T |
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| Q |
149 |
aagttcctgattttcaaagcgaagaagacacgtttaaacaattggaacatctgatgaaagaaattgtgaagaaaggaccaatattgtttgtcctagacga |
248 |
Q |
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| T |
33867506 |
atgttccggattttcaaaacgaagaagacacgtttaaccaattggaacatttgatgaaacaagttgtgaagaaaggaccaatattgttagtcctagacga |
33867605 |
T |
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| Q |
249 |
tgtttggcaaggatcagaatcatttcttgacaattttgtgtttgatatcccaaactacaagattttggttacatcaagattt |
330 |
Q |
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| T |
33867606 |
tgtttggctagggtcagaatcacttgttgataattttgtgtttgagattccaaactacaagattttggtgacatcaagattt |
33867687 |
T |
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