View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_28 (Length: 322)
Name: NF14642_low_28
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_28 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 35095691 - 35095386
Alignment:
| Q |
17 |
caaattgggcgggcgttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaagga |
116 |
Q |
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| T |
35095691 |
caaattgggcgggcgttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaagga |
35095592 |
T |
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| Q |
117 |
tttaccgtatatcagaaccattagcttaatgaacaaccaattcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095591 |
tttaccgtatatcagaaccattagcttaatgaacaaccaattcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttct |
35095492 |
T |
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| Q |
217 |
aataataaattctctggcgagattccagcagaggcgtttcaagcgatgcagtggctgaagaaaatttatctcgacaataatcagttcactggtcctattc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095491 |
aataataaattctctggcgagattccagcagaggcgtttcaagcgatgcagtggctgaagaaaatttatctcgacaataatcagttcactggtcctattc |
35095392 |
T |
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| Q |
317 |
caactt |
322 |
Q |
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|||||| |
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| T |
35095391 |
caactt |
35095386 |
T |
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