View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_29 (Length: 318)
Name: NF14642_low_29
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_29 |
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| [»] chr8 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 37375033 - 37375331
Alignment:
| Q |
24 |
gcaacgatattattttgattttctgctataactttatcatctat----ttatttatgtattataaattcacaagtatgtcagtagattaactcaaataag |
119 |
Q |
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| T |
37375033 |
gcaacggtattattttgattttctgctataactttatcatctatatatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataag |
37375132 |
T |
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| Q |
120 |
caactttaaaataagcaaattcagagagacaatctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggt |
219 |
Q |
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| T |
37375133 |
caactttaaaataagcaaattcagagagacaatctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggt |
37375232 |
T |
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| Q |
220 |
cgagtgtggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggaga |
318 |
Q |
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| T |
37375233 |
cgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggaga |
37375331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 37382373 - 37382666
Alignment:
| Q |
25 |
caacgatattattttgattttctgctataactttatcatctatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaact |
124 |
Q |
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| T |
37382373 |
caacggtattattttgattctctgctataactttatcttcaatttaattctgtattataaattcacatgtatgtaagtggataaactcaaataagcgaat |
37382472 |
T |
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| Q |
125 |
ttaaaataagcaaattcagagagaca----atctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtc |
220 |
Q |
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| T |
37382473 |
tcaaaataagccaattcaaagagacacgtaacctaaaacaaaagttcttattgaccttttcacgtgatttcctagggtgctgcttatcaagaatctggtc |
37382572 |
T |
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| Q |
221 |
gagtgtggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagg |
314 |
Q |
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| T |
37382573 |
gagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgtaaatacaaagttaggagcagg |
37382666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 316
Target Start/End: Original strand, 37360212 - 37360512
Alignment:
| Q |
25 |
caacgatattattttgattttctgctataactttatcatctatttat--ttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaa |
122 |
Q |
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| T |
37360212 |
caacggtattattttgattttctgctataactttatcttctatatatatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaa |
37360311 |
T |
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| Q |
123 |
ctttaaaataagcaaattcagagagaca----atctaaaacaaaagtt---cttattgaccttttcttgtgatatactagggtgctgcttatcaagaact |
215 |
Q |
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| T |
37360312 |
tttcaaaataaggcaattcaaagagacacataatctatttttttttttatccttattgaccttttcttgcgatatcacagggtgctgcttatcaagaatc |
37360411 |
T |
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| Q |
216 |
tggtcgagtgtggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcaggg |
315 |
Q |
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| T |
37360412 |
tggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccggg |
37360511 |
T |
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| Q |
316 |
a |
316 |
Q |
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| T |
37360512 |
a |
37360512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 37367852 - 37367550
Alignment:
| Q |
25 |
caacgatattattttgattttctgctataactttatcatctatttat--ttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaa |
122 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||| || ||||||||| ||||||||| ||||| ||||||||| |
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| T |
37367852 |
caacggtattattttgattttctgctataactttatcttctatatatatttatgcattatacatacacaagtatatcagtagataaactcgaataagcaa |
37367753 |
T |
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| Q |
123 |
ctttaaaataagcaaattcagagagacaa----tctaaaacaaaagtt-----cttattgaccttttcttgtgatatactagggtgctgcttatcaagaa |
213 |
Q |
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| T |
37367752 |
tttcaaaataaggcaattcaaagagacacatattctaattttttttttttatccttattgaccttttcttgcgatatcacagggtgctgcttatcaagaa |
37367653 |
T |
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| Q |
214 |
cttggtcgagtgtggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcag |
313 |
Q |
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|||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||| | |
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| T |
37367652 |
tcaggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccg |
37367553 |
T |
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| Q |
314 |
gga |
316 |
Q |
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||| |
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| T |
37367552 |
gga |
37367550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 41230039 - 41229911
Alignment:
| Q |
190 |
tactagggtgctgcttatcaagaacttggtcgagtgtggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatga |
289 |
Q |
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| T |
41230039 |
tactagggcggtgcttatcaagaatctggtcgtgtgtggcatgcaaaagacatagcaatcccaaaaagagcttgtggatggatgcagaatggtttcatga |
41229940 |
T |
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| Q |
290 |
gtgtaaatacaaggttaggagcagggaga |
318 |
Q |
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| T |
41229939 |
gtgtagatacaacattaggggcagggaga |
41229911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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