View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_3 (Length: 581)
Name: NF14642_low_3
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 40112224 - 40111655
Alignment:
| Q |
1 |
ttgtctttcacatttttctctgtgtttgcttctttggtggtgcggattctcggttccaagaatgctttgattattggaacatctggttattggttctacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40112224 |
ttgtctttcacatttttctctgtgtttgcttctttggtggtgcggattctcggttccaagaatgctttgattattggaacatctggttattggttctacg |
40112125 |
T |
|
| Q |
101 |
ttgctgcaaatttgaagcccagttggtaagaactgcatgcaacatccggtgcaagctatgttgctatttatattcatttgtttttaatcatggttannnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40112124 |
ttgctgcaaatttgaagcccagttggtaagaactgcatgcaacatccggtgcaagctatgttgctatttatattcatttgtttttaatcatggttatttt |
40112025 |
T |
|
| Q |
201 |
nnnaccattatattggttagaagtttccaccaccgtttaacaataactaatctcgttcgaaaacatatagggcacataaggtggattctccccgcccaac |
300 |
Q |
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| T |
40112024 |
tttaccattatattggttagaagtttccaccgccgtttaacaataactaatctccgtcgaaaacatatagggcacataaggtggattctccccgcccaac |
40111925 |
T |
|
| Q |
301 |
agattttttctccataagcatgatccaattaacgacatgcttaagggatttgagttccttaccacttggaccaattcattgttgattaatcttaatatgc |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40111924 |
agattttttctccatacgcatgatccaattaacgacatgcttaagggatttgagttccttaccacttggaacaattcattgttgattaatcttaatatgc |
40111825 |
T |
|
| Q |
401 |
ttttctaatcgtggcttttgtagaagaaagaagtctgtattatttgtatctctcaataccatatgaaaaattttggatttttccatggggttattttgga |
500 |
Q |
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| T |
40111824 |
ttttctaatcgtggcttttgtagaagaaagaagtctgtattatttgtatctctaaataccatatgaaaaattttggatttttccatggggttattttgga |
40111725 |
T |
|
| Q |
501 |
tatttaatagaacgtatacattgtttattagtgtgggtggatccttggttccactcgaaagtatgtgtat |
570 |
Q |
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| T |
40111724 |
tatttaatagaacgtatacattgtttattagtgtgggtggatccttggttccactcgaaagtatgtgtat |
40111655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 40149922 - 40149794
Alignment:
| Q |
2 |
tgtctttcacatttttctctgtgtttgcttctttggtggtgcggattctcggttccaagaatgctttgattattggaacatctggttattggttctacgt |
101 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
40149922 |
tgtcttttacatttttttctgtgtttgcttctttggtggtgcggattctcggatccaagaatgctttgattatcggaacatctggttattggttatacgt |
40149823 |
T |
|
| Q |
102 |
tgctgcaaatttgaagcccagttggtaag |
130 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
40149822 |
ggctgcaaatttgaagcccaattggtaag |
40149794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 40156296 - 40156168
Alignment:
| Q |
1 |
ttgtctttcacatttttctctgtgtttgcttctttggtggtgcggattctcggttccaagaatgctttgattattggaacatctggttattggttctacg |
100 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||||| ||| |
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| T |
40156296 |
ttgtcttttacatttttttctgtgtttgcttctttggtggtgcggattctcggatccaagaatgctttgattgttggaacttcgggttattggttatacc |
40156197 |
T |
|
| Q |
101 |
ttgctgcaaatttgaagcccagttggtaa |
129 |
Q |
| |
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| ||||||||||||||||||| ||||||| |
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|
| T |
40156196 |
tggctgcaaatttgaagcccaattggtaa |
40156168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 43460271 - 43460320
Alignment:
| Q |
335 |
acatgcttaagggatttgagttccttaccacttggaccaattcattgttg |
384 |
Q |
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||||||||||||| || ||| ||||||||||||||||||| |||||||| |
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| T |
43460271 |
acatgcttaaggggttcaagtcccttaccacttggaccaatccattgttg |
43460320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 32729307 - 32729359
Alignment:
| Q |
204 |
accattatattggttagaagtttccaccaccgtttaacaataactaatctcgt |
256 |
Q |
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||||| |||||||| ||||||||||| |||| |||||||| ||||||||||| |
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| T |
32729307 |
accatgatattggtatgaagtttccacaaccgcttaacaatgactaatctcgt |
32729359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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