View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14642_low_32 (Length: 305)

Name: NF14642_low_32
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14642_low_32
NF14642_low_32
[»] chr6 (4 HSPs)
chr6 (14-197)||(6765525-6765706)
chr6 (14-190)||(6679848-6680022)
chr6 (259-304)||(6766088-6766133)
chr6 (259-304)||(6775040-6775085)
[»] chr3 (2 HSPs)
chr3 (19-190)||(49881832-49882004)
chr3 (31-190)||(46522285-46522445)
[»] chr5 (3 HSPs)
chr5 (28-190)||(6162089-6162252)
chr5 (21-190)||(36847707-36847877)
chr5 (117-190)||(36859362-36859435)
[»] chr1 (1 HSPs)
chr1 (126-188)||(18135855-18135917)
[»] scaffold0299 (2 HSPs)
scaffold0299 (19-91)||(13676-13748)
scaffold0299 (259-303)||(13209-13253)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 6765525 - 6765706
Alignment:
Q  14 catagggagaaaataagactgaccatcggtgtagtttatcattcttcgtagtcttttgctcttcgagatgacaatatatagtatataatcatcaccnnnn 113  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||        
T  6765525 cataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatataa--tatataatcatcacctttt 6765622  T
Q  114 nnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgatataagaag 197  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6765623 tttggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgatataagaag 6765706  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 6680022 - 6679848
Alignment:
Q  14 catagggagaaaataagactgaccatcggtgtagtttatcattcttcgtagtcttttgctcttcgagatgacaatatatagtatataatcatcaccnnnn 113  Q
    |||| ||||||| ||||||||||||  || |||| ||||||||||||| |||||||||||||| | |||| |||||||   |||||||||||||||        
T  6680022 cataaggagaaagtaagactgaccagtggcgtagcttatcattcttcggagtcttttgctctttgggatggcaatataa--tatataatcatcacctttt 6679925  T
Q  114 nnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 190  Q
       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679924 tttggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 6679848  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 6766088 - 6766133
Alignment:
Q  259 tataaaatgacctagctacacacacatacgacatacatgttacttc 304  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  6766088 tataaaatgacctagctacacacacatacaacatacatgttacttc 6766133  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 6775040 - 6775085
Alignment:
Q  259 tataaaatgacctagctacacacacatacgacatacatgttacttc 304  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||    
T  6775040 tataaaatgacctagctacacacacatagaacatacatattacttc 6775085  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 49882004 - 49881832
Alignment:
Q  19 ggagaaaataagactgaccatcggtgtagtttatcattcttcgtagtcttttgctcttcgagatgacaatatatagtatataatcatcaccnnnnnnng- 117  Q
    |||||||  ||||||||||| ||| |||| ||||||||||||| |||||||||||||||  ||||||||||||  ||||||||||||| ||       |     
T  49882004 ggagaaagaaagactgaccaacggcgtagcttatcattcttcggagtcttttgctcttcaggatgacaatata--gtatataatcatccccttttcttga 49881907  T
Q  118 --gagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 190  Q
      |||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  49881906 aggagcacaggcccatatgtagcaagttgagaaaccccgtttcttacaaaaatcaaggtatccaatctgatgata 49881832  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 46522445 - 46522285
Alignment:
Q  31 actgaccatcggtgtagtttatcattcttcgtagtcttttgctcttcgagatgacaatatatagtatataatcatcaccnnnnnnng---gagcacaggc 127  Q
    |||||||| ||| |||| ||||||||||||| |||||||||||||| | | || |||||||  ||||||||||||| ||       |   ||||||||||    
T  46522445 actgaccaccggcgtagcttatcattcttcggagtcttttgctctttggggtggcaatata--gtatataatcatccccttttcttgaaggagcacaggc 46522348  T
Q  128 ccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 190  Q
    |||||||||||||||   |||||||||||  |||||||||||||| |||||||||||||||||    
T  46522347 ccatatgtagcaagtcaggaaacccctttttttacaaaaatcaaggtatccaatctgatgata 46522285  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 6162089 - 6162252
Alignment:
Q  28 aagactgaccatcggtgtagtttatcattcttcgtagtcttttgctcttcgagatgacaatatatagtatataatcatcaccnnnnnnng---gagcaca 124  Q
    ||||||||||| ||| | || ||||||||||||| |||||||||||||||| |||| |||||||  ||||||||||||| ||       |   |||||||    
T  6162089 aagactgaccagcggcgcagcttatcattcttcggagtcttttgctcttcgggatggcaatata--gtatataatcatcccctttctttgaaggagcaca 6162186  T
Q  125 ggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 190  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  6162187 ggcccgtatgtagcaagttgagaaaccccttttgttacaaaaatcaaggtatccaatctgatgata 6162252  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 36847707 - 36847877
Alignment:
Q  21 agaaaataagactgaccatcggtgtagtttatcattcttcgtagtcttttgctcttcgagatgacaatatatagtatataatcatcaccnnnnnnng--- 117  Q
    |||||| ||||||||||| ||| |||| ||||||||||| | ||| |||||||||||| |||| |||||||  ||||||||||||| ||       |       
T  36847707 agaaaaaaagactgaccaacggcgtagcttatcattctttggagttttttgctcttcgggatggcaatata--gtatataatcatcccctttttctgaag 36847804  T
Q  118 gagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 190  Q
    ||||||||| ||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||||||||||||    
T  36847805 gagcacaggaccatatgtagcaagttgagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgata 36847877  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 36859362 - 36859435
Alignment:
Q  117 ggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 190  Q
    |||||||| |||||||||||||||||||||||||| | || ||| ||||||||||| |||||||||||||||||    
T  36859362 ggagcacatgcccatatgtagcaagttgagaaaccacctttcttgcaaaaatcaaggtatccaatctgatgata 36859435  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 18135917 - 18135855
Alignment:
Q  126 gcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatga 188  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  18135917 gcccacatgtagcaagttgagaaaccccttttcttataaaaatcaaggtatccaatctgatga 18135855  T

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Target: scaffold0299 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 13748 - 13676
Alignment:
Q  19 ggagaaaataagactgaccatcggtgtagtttatcattcttcgtagtcttttgctcttcgagatgacaatata 91  Q
    ||||||| |||||||||||| ||| |||| ||||||||||||| |||||||||| ||||| |||| |||||||    
T  13748 ggagaaagtaagactgaccagcggcgtagcttatcattcttcggagtcttttgcacttcgggatggcaatata 13676  T

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Target: scaffold0299; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 13253 - 13209
Alignment:
Q  259 tataaaatgacctagctacacacacatacgacatacatgttactt 303  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||    
T  13253 tataaaatgacctagctacacacacatacaacacacatgttactt 13209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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