View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_36 (Length: 284)
Name: NF14642_low_36
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 25 - 268
Target Start/End: Original strand, 39543345 - 39543588
Alignment:
| Q |
25 |
aaatcaaaagagggaaaattgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttgagcaagtctaacaagtcttt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39543345 |
aaatcaaaagagggaaaattgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttcagcaagtctaacaagtcttt |
39543444 |
T |
|
| Q |
125 |
caagtaaatcttttctttcttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543445 |
caagtaaatcttttctttcttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaa |
39543544 |
T |
|
| Q |
225 |
agtaggaagtttctgaatggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39543545 |
agtaggaagtttctgaatggcagcccatttaagagcttcttcat |
39543588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 39 - 268
Target Start/End: Original strand, 39552582 - 39552811
Alignment:
| Q |
39 |
aaaattgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttgagcaagtctaacaagtctttcaagtaaatctttt |
138 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
39552582 |
aaaattgaattttaacctgtcgattcgatccttgagtttgagcaaaaacttttcattgtcttcttcagcaagtctaacaagtctttcaagtaaatctttt |
39552681 |
T |
|
| Q |
139 |
ctttcttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttct |
238 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
39552682 |
ctttcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttct |
39552781 |
T |
|
| Q |
239 |
gaatggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
39552782 |
gaattgcagcccatttaagagcttcttcat |
39552811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 39 - 268
Target Start/End: Complemental strand, 39344389 - 39344160
Alignment:
| Q |
39 |
aaaattgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttgagcaagtctaacaagtctttcaagtaaatctttt |
138 |
Q |
| |
|
||||||||||| ||||||||| || |||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
39344389 |
aaaattgaatttgaacctgtccatgcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatctttt |
39344290 |
T |
|
| Q |
139 |
ctttcttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttct |
238 |
Q |
| |
|
||| ||||||||||||||||||||||||| | ||| |||||||||||||| || ||| |||||||||||||| |||||| |||||||||||||||||| |
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| T |
39344289 |
cttacttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttct |
39344190 |
T |
|
| Q |
239 |
gaatggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
39344189 |
gaattgcagcccatttaagagcttcttcat |
39344160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 43 - 268
Target Start/End: Complemental strand, 39358961 - 39358736
Alignment:
| Q |
43 |
ttgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttgagcaagtctaacaagtctttcaagtaaatcttttcttt |
142 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39358961 |
ttgaattcgaacctatccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttcttt |
39358862 |
T |
|
| Q |
143 |
cttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctgaat |
242 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||||||||||||| || ||| |||||||||||||| |||||| ||||||||||||| |||||||| |
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|
| T |
39358861 |
cttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagcttctgaat |
39358762 |
T |
|
| Q |
243 |
ggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
|||||||||||||||| |||||||| |
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|
| T |
39358761 |
tgcagcccatttaagagattcttcat |
39358736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 39569432 - 39569649
Alignment:
| Q |
51 |
gaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttgagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaac |
150 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
39569432 |
gaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagc |
39569531 |
T |
|
| Q |
151 |
ccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctgaatggcagccc |
250 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||| || ||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| |
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| T |
39569532 |
ccaagcttctcaatatcaatctcaacggcttccccttgaagtgaagtgagcaaacctttcctcaaacgcgcaaaagtaggaagattctgaattgcagccc |
39569631 |
T |
|
| Q |
251 |
atttaagagcttcttcat |
268 |
Q |
| |
|
| |||||||||||||||| |
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|
| T |
39569632 |
acttaagagcttcttcat |
39569649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 43 - 268
Target Start/End: Complemental strand, 39333115 - 39332890
Alignment:
| Q |
43 |
ttgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttgagcaagtctaacaagtctttcaagtaaatcttttcttt |
142 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||| || |||||||| ||| |
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|
| T |
39333115 |
ttgaatccgaacctgtctattcgatccttaagtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatctttctttt |
39333016 |
T |
|
| Q |
143 |
cttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctgaat |
242 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||| ||| | | ||||| || ||| ||||||||||||||| |||||| ||||||||||||| ||||||| |
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|
| T |
39333015 |
cttgcatcccaaggttctcaacatcaatctcgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaaggatctgaat |
39332916 |
T |
|
| Q |
243 |
ggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39332915 |
tgcagcccatttaagagcttcttcat |
39332890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 2166851 - 2166893
Alignment:
| Q |
226 |
gtaggaagtttctgaatggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2166851 |
gtaggaagtctctcaatagcagcccatttaagagcttcttcat |
2166893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 4494246 - 4494210
Alignment:
| Q |
232 |
agtttctgaatggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
4494246 |
agtttctcaattgcagcccatttaagagcttcttcat |
4494210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 44238444 - 44238488
Alignment:
| Q |
224 |
aagtaggaagtttctgaatggcagcccatttaagagcttcttcat |
268 |
Q |
| |
|
||||||| ||||| | || |||||||||||||||||||||||||| |
|
|
| T |
44238444 |
aagtaggtagtttttcaagggcagcccatttaagagcttcttcat |
44238488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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