View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14642_low_37 (Length: 281)

Name: NF14642_low_37
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14642_low_37
NF14642_low_37
[»] chr3 (14 HSPs)
chr3 (24-268)||(9336556-9336800)
chr3 (24-268)||(9329852-9330096)
chr3 (55-245)||(9395298-9395491)
chr3 (168-261)||(41980877-41980970)
chr3 (166-267)||(9756397-9756498)
chr3 (168-268)||(41985644-41985744)
chr3 (171-268)||(9494811-9494908)
chr3 (167-267)||(9695615-9695715)
chr3 (168-268)||(9343861-9343961)
chr3 (168-268)||(9407382-9407482)
chr3 (168-268)||(9448330-9448430)
chr3 (168-247)||(9485969-9486048)
chr3 (168-247)||(13864241-13864320)
chr3 (167-268)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (159-243)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (160-247)||(7025793-7025880)
chr6 (159-266)||(7041514-7041621)
chr6 (160-247)||(7029850-7029937)
chr6 (157-247)||(7012857-7012947)
chr6 (157-247)||(9170854-9170944)
chr6 (168-248)||(7046875-7046955)
chr6 (157-247)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (224-268)||(4439876-4439920)
chr1 (232-268)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (227-268)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 9336800 - 9336556
Alignment:
Q  24 ggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagtt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9336800 ggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggtcgagagtagtgagtttgagtt 9336701  T
Q  124 gttgctggtggatagatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaattta 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336700 gttgctggtggatagatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaattta 9336601  T
Q  224 ggagataaggttttgttcttggggaatggatgttcgttctctgct 268  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  9336600 ggagataaggttttgttcttggggaatggatgttcgttttctgct 9336556  T

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Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 9330096 - 9329852
Alignment:
Q  24 ggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagtt 123  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  9330096 ggactttcatgattggaccggatttaaccactcatttgatcgctgagccggtgtttggtgggaaaagtaaattcttggtcgagagtagtgagtttgagtt 9329997  T
Q  124 gttgctggtggatagatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaattta 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  9329996 gttgctggtggatagatatgaaaattatcgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaattta 9329897  T
Q  224 ggagataaggttttgttcttggggaatggatgttcgttctctgct 268  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||    
T  9329896 ggagataaggttttgttcttggggaatggatattcgttttctgct 9329852  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 9395491 - 9395298
Alignment:
Q  55 tcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaattatt-- 152  Q
    |||||| || |||||||| ||| |||| ||  ||| |||||||||||| |||| |||||| ||| |||||||||| ||||||| |||| ||||| ||       
T  9395491 tcattttatagctgagcctgtgattggcggagaaagtaaattcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgat 9395392  T
Q  153 -gtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgg 245  Q
     |||||  |||| ||||||||||||||||||||||||||||  |||||| |||||| ||| |||| ||||||||||||  ||||||||||||||    
T  9395391 cgtgttattgtaaggattgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 41980970 - 41980877
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgtt 261  Q
    |||||||||||||||||| | |||||||||| |  ||||||||| |||||| |||||| ||||  |||||||||||||||||||||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 9756498 - 9756397
Alignment:
Q  166 gattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctct 265  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||| || |||| ||||||||| || ||| | || ||||| ||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcattctct 9756399  T
Q  266 gc 267  Q
    ||    
T  9756398 gc 9756397  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 41985744 - 41985644
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 267  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  ||||||||||||||||||||||||||||| |||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  268 t 268  Q
    |    
T  41985644 t 41985644  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 9494811 - 9494908
Alignment:
Q  171 atgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgct 268  Q
    ||||| |||||||||||||||| ||||  || ||||| ||  ||| || |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  9494811 atgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgct 9494908  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 9695615 - 9695715
Alignment:
Q  167 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 266  Q
    |||||||| || |||||||||||||| ||||| | |||||||||| |||| |||||||| |||| ||||||||| |||||| | |  |||||||||||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctg 9695714  T
Q  267 c 267  Q
    |    
T  9695715 c 9695715  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 9343961 - 9343861
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 267  Q
    |||||||||||| |||||||||||  ||||| | |||||| ||| | || | |||||| ||||  ||||||||||||||||||| ||||||||| |||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  268 t 268  Q
    |    
T  9343861 t 9343861  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 9407482 - 9407382
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 267  Q
    ||||||||||||| ||||| |||||  | ||||| ||||| ||| ||| || |||||| |||| |||||||||||| | |||||||||||| || |||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  268 t 268  Q
    |    
T  9407382 t 9407382  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 9448430 - 9448330
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 267  Q
    |||||||||||| |||| ||||||| ||||| |  ||||| ||| | || | |||||| ||||  |||||||||||||||||||  |||||||| |||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  268 t 268  Q
    |    
T  9448330 t 9448330  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 9485969 - 9486048
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 247  Q
    ||||||||||||||||||||||||| ||||| | ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 13864320 - 13864241
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 247  Q
    ||||||||||||||||||||||||  ||||||| ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 9617462 - 9617563
Alignment:
Q  167 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 266  Q
    ||||| ||||| ||| || ||||||||||||| |  ||||| ||| |||  |||||||| |||| |||||||||| | | |||||||||||| || ||||    
T  9617462 attgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctg 9617561  T
Q  267 ct 268  Q
    ||    
T  9617562 ct 9617563  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 450102 - 450186
Alignment:
Q  159 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttctt 243  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||   ||||||||||    
T  450102 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 7025880 - 7025793
Alignment:
Q  160 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 247  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 7041621 - 7041514
Alignment:
Q  159 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttc 258  Q
    |||||||||||||| ||||||  ||| ||||||| ||||| | |||||| ||| |||| | |||||| |||| |||||||||||||||  | | ||||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  259 gttctctg 266  Q
    ||||||||    
T  7041521 gttctctg 7041514  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 7029937 - 7029850
Alignment:
Q  160 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 247  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||| || |||| ||||||||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 7012947 - 7012857
Alignment:
Q  157 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 247  Q
    ||||||| | |||||| |||||| |||| ||||||| ||||| | |||||| ||| |||| | ||||||||||| | ||||||||||||||    
T  7012947 tcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 9170944 - 9170854
Alignment:
Q  157 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 247  Q
    ||||||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9170944 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 7046955 - 7046875
Alignment:
Q  168 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggga 248  Q
    ||||| |||||| |||| ||||||| ||||| | |||||| ||| | |||| |||||| ||||| ||||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggga 7046875  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 9159484 - 9159574
Alignment:
Q  157 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 247  Q
    ||||||| |||||||| |||||| |||| | ||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9159484 tcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 4439920 - 4439876
Alignment:
Q  224 ggagataaggttttgttcttggggaatggatgttcgttctctgct 268  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  4439920 ggagatagggttttgtttttggggaatggatgttcgttttctgct 4439876  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 18991256 - 18991220
Alignment:
Q  232 ggttttgttcttggggaatggatgttcgttctctgct 268  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18991256 ggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 20694360 - 20694401
Alignment:
Q  227 gataaggttttgttcttggggaatggatgttcgttctctgct 268  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  20694360 gatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

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