View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_low_39 (Length: 273)
Name: NF14642_low_39
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 42229944 - 42230085
Alignment:
| Q |
1 |
actggagatccaatgcacaagggtggtcctgttggtggcacacgtgtttaaataaacatcattatccatataactacactttgtttcttg-tttttaata |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42229944 |
actggagatccaatgcacaagggtggtcctgttggtggcactcgtgtttaaataaatatcattatccatataactacactttgtttcttgttttttaata |
42230043 |
T |
|
| Q |
100 |
atattgtagtctcctagtttgggacacgggactatgttcctg |
141 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42230044 |
atattgtagtttcctagtttgggacacgggactatgttcctg |
42230085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 42230113 - 42230213
Alignment:
| Q |
169 |
gggtttgttgtatgaagagtgtcactttgtagcattacgttgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcatct |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42230113 |
gggtttgttgtatgaagagtgtcactttgtagcattacattgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
42230212 |
T |
|
| Q |
269 |
c |
269 |
Q |
| |
|
| |
|
|
| T |
42230213 |
c |
42230213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University