View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_42 (Length: 258)
Name: NF14642_low_42
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_42 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 40285885 - 40286136
Alignment:
| Q |
7 |
tattgaaccatttttgtattggaaggtagtaaagttattagatactaagccttaacatagttacttgatatgcaagccagctgtattttgtacattagta |
106 |
Q |
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| T |
40285885 |
tattgaaccatttttgtattggaaggtagtaaagttattagatactaagccttaacatagttacttgatatgcaagccagctgtattttgtacattagta |
40285984 |
T |
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| Q |
107 |
ccagacttaactgataaactaactcccgttacagttagttatgattggttaagggttgttacagttagttagaggcttccccatcacacactgtgtatat |
206 |
Q |
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| T |
40285985 |
ccagacttaactgataaactaactctagttacagttagttatgattggttaagggttgttacagttagttagaggcttccccatcacacactgtgtatat |
40286084 |
T |
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| Q |
207 |
aaacttgtaatccttccctttgtaatcattcaatacaatgtttattcatttt |
258 |
Q |
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| T |
40286085 |
acacttgtaatccttccctttgtaatcattcaatacaatgtttattcatttt |
40286136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 40457062 - 40456809
Alignment:
| Q |
7 |
tattgaaccatttttgtattggaaggtagtaaagttattagatactaagccttaacatagttacttgatatgcaagccagctgtattttgtacattagta |
106 |
Q |
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| T |
40457062 |
tattgaaccatttttgtattggaaggtagtaaagttattagataccaagccttaacatagttacttgatatgcaagccagctgtattttgtacattcgaa |
40456963 |
T |
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| Q |
107 |
ccagacttaactgataaactaactcccgttacagttagttatgattggttaagggttgttacagttagttagaggcttccccat--cacacactgtgtat |
204 |
Q |
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| T |
40456962 |
ccaaacttaactgataaactaactctggttgcagttagttatgattggttaagggttgttacagttagttagagacttccccttcacacacactgtgtat |
40456863 |
T |
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| Q |
205 |
ataaacttgtaatccttccctttgtaatcattcaatacaatgtttattcatttt |
258 |
Q |
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| T |
40456862 |
atatacttgtaatccttccctttgtaatcattcaatacaatgttgattcatttt |
40456809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 44152222 - 44152053
Alignment:
| Q |
40 |
gttattagatactaagccttaacatagttacttgatatgcaagccagctgtattttgtacattagtaccagacttaactgataaactaactcccgttaca |
139 |
Q |
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| T |
44152222 |
gttattagatactaagccttaacatagttgcttgaaatgcaagccagctgtattttgtacattagaaccagacttaactgataaactaactctagttaca |
44152123 |
T |
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| Q |
140 |
gttagttatgattggttaagggttgttacagttagttagaggcttccccat--cacacactgtgtatata |
207 |
Q |
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| T |
44152122 |
attagttaagattggttaagggttgttaccgttagttagagacttccccttcacacacactgtgtatata |
44152053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 38877873 - 38877963
Alignment:
| Q |
66 |
gttacttgatatgcaagccagctgtattttgtacattagtaccagacttaactgataaactaactcccgttacagttagttatgattggtta |
157 |
Q |
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| T |
38877873 |
gttacttgttacacaagccagctgtattttgtacattag-attagacttaactgataaactaagtatagttagagttagctatgattggtta |
38877963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 19330455 - 19330592
Alignment:
| Q |
42 |
tattagatactaagccttaacatagttacttgatatgcaagccagctgtattttgtacattagtaccagacttaactgataaactaactcccgttacagt |
141 |
Q |
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| T |
19330455 |
tattagatactaagccttaatacagtaacttgatatgcaagccagctgtattctgtacgttagaaccagacttaactgataaactaactctagttacagt |
19330554 |
T |
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| Q |
142 |
tagttatgattggttaagggttgttacagttagttaga |
179 |
Q |
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| T |
19330555 |
tagttatgattggttaagggctgttacagttagttaga |
19330592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 5205373 - 5205583
Alignment:
| Q |
42 |
tattagatactaagccttaacatagttacttgatatgcaagccagctgtattttgtacattagtaccagacttaactgataaactaactcccgttacagt |
141 |
Q |
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| T |
5205373 |
tattagatactaagccttaacatggttacttgctatacaagtcatctgtgttttatacattag-attggacttaactgataaactaactatagttacaat |
5205471 |
T |
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| Q |
142 |
tagttatgattggttaagggttgttacagttagttagaggcttccccatcacacactgtgtatataaacttgtaatccttccctttgtaatcattcaata |
241 |
Q |
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|||| ||||||||||| || | |||||| |||||||||| ||| || ||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
5205472 |
tagtcatgattggtta-ggatagttacatttagttagagacttttccttcacacattgtgtatatatacttgcaatccttccctttgtaatcattcaata |
5205570 |
T |
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| Q |
242 |
caatgtttattca |
254 |
Q |
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| T |
5205571 |
caatgttgattca |
5205583 |
T |
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