View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_43 (Length: 257)
Name: NF14642_low_43
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 42881794 - 42881556
Alignment:
| Q |
1 |
ccagtagcagctgaacagaacagcaactctgctatcatgacagcagccactacccaaagcgcctagcagcaaacagacctgcaagacacaacagcagcaa |
100 |
Q |
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| T |
42881794 |
ccagtagcagctgaacagaacagcaactctgctatcatgacagcagccactacccaaagcgcctagcagcaaacagacctgcaagacacaacagcagcaa |
42881695 |
T |
|
| Q |
101 |
cagcaagaacccaggaaaggctcatacgctgacaaaacaccacagcaccactgca-cagctgcaaaaacacccctaaagcacactgttcagccgcaaatc |
199 |
Q |
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|||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42881694 |
cagcaaaaacccagaaaaggctcacacgctgacaaaacaccacagcaccaatgcagcagctgcaaaaacacccctaaagcacactgttcagccgcaaatc |
42881595 |
T |
|
| Q |
200 |
acaccaaggcaccactttggattccacctccactcgtag |
238 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |
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| T |
42881594 |
acaccaaggcaccacttcggattccacctccactcgtag |
42881556 |
T |
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